Chlorine in PDB 5lq7: Salmonella Effector Spvd - G161 Variant

The structure of Salmonella Effector Spvd - G161 Variant, PDB code: 5lq7 was solved by M.Przydacz, G.J.Grabe, D.W.Holden, S.A.Hare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.98 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	44.000, 51.970, 47.220, 90.00, 107.70, 90.00
R / Rfree (%)	16.3 / 19.7

The structure of Salmonella Effector Spvd - G161 Variant also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Chlorine atom in the Salmonella Effector Spvd - G161 Variant (pdb code 5lq7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Salmonella Effector Spvd - G161 Variant, PDB code: 5lq7:

Chlorine binding site 1 out of 1 in the Salmonella Effector Spvd - G161 Variant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Salmonella Effector Spvd - G161 Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl305 b:22.2 occ:1.00 OG1 A:THR100 2.9 17.8 1.0 O A:HOH501 3.2 18.3 1.0 CD A:PRO99 3.7 20.2 1.0 CB A:THR100 3.8 18.9 1.0 CG A:PRO99 3.9 21.1 1.0 CB A:PRO99 3.9 18.2 1.0 N A:THR100 4.0 20.1 1.0 O1 A:TRS301 4.3 19.3 1.0 N A:PRO99 4.3 20.0 1.0 OG A:SER98 4.3 16.8 1.0 CD1 A:ILE157 4.4 15.0 1.0 CG2 A:ILE157 4.5 14.9 1.0 CA A:PRO99 4.5 18.7 1.0 CA A:THR100 4.6 19.6 1.0 C A:PRO99 4.6 20.6 1.0

G.J.Grabe, Y.Zhang, M.Przydacz, N.Rolhion, Y.Yang, J.N.Pruneda, D.Komander, D.W.Holden, S.A.Hare. The Salmonella Effector Spvd Is A Cysteine Hydrolase with A Serovar-Specific Polymorphism Influencing Catalytic Activity, Suppression of Immune Responses, and Bacterial Virulence. J. Biol. Chem. V. 291 25853 2016.
ISSN: ESSN 1083-351X
PubMed: 27789710
DOI: 10.1074/JBC.M116.752782