Atomistry » Chlorine » PDB 5lo9-5lui » 5lsh
Atomistry »
  Chlorine »
    PDB 5lo9-5lui »
      5lsh »

Chlorine in PDB 5lsh: Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae

Enzymatic activity of Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae

All present enzymatic activity of Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae:
3.2.1.17;

Protein crystallography data

The structure of Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae, PDB code: 5lsh was solved by R.Zhang, N.E.Nifantiev, V.Krylov, T.Luetteke, A.J.Scheidig, H.-C.Siebert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.27 / 1.06
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 33.108, 56.040, 60.531, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 20.3

Other elements in 5lsh:

The structure of Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae (pdb code 5lsh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae, PDB code: 5lsh:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5lsh

Go back to Chlorine Binding Sites List in 5lsh
Chlorine binding site 1 out of 3 in the Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:13.0
occ:1.00
 NH1 A:ARG107 3.1 20.3 1.0
O A:HOH346 3.1 22.7 1.0
O A:HOH393 3.2 13.1 1.0
NH2 A:ARG107 3.6 12.7 1.0
CH2 A:TRP112 3.8 11.9 1.0
CZ A:ARG107 3.8 15.3 1.0
CG A:GLN117 4.4 10.9 1.0
CZ2 A:TRP112 4.4 10.5 1.0
NE2 A:GLN117 4.7 19.8 1.0
OD1 A:ASN118 4.7 19.3 1.0
CZ3 A:TRP112 4.8 11.6 1.0
CD A:GLN117 5.0 14.9 1.0

Chlorine binding site 2 out of 3 in 5lsh

Go back to Chlorine Binding Sites List in 5lsh
Chlorine binding site 2 out of 3 in the Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:11.8
occ:1.00
 ND2 A:ASN27 3.2 9.2 1.0
O A:HOH404 3.3 18.5 1.0
O A:HOH356 4.0 11.9 1.0
CG A:ASN27 4.3 7.6 1.0
O A:HOH393 4.5 13.1 1.0
OG A:SER24 4.5 8.7 1.0
OD1 A:ASN27 4.5 9.1 1.0

Chlorine binding site 3 out of 3 in 5lsh

Go back to Chlorine Binding Sites List in 5lsh
Chlorine binding site 3 out of 3 in the Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:15.4
occ:1.00
 O A:HOH337 2.9 18.6 1.0
O A:HOH450 3.1 27.3 1.0
N A:ASP87 3.2 8.9 1.0
N A:ASN88 3.5 8.6 1.0
CB A:ASP87 3.7 9.6 1.0
CB A:GLN86 3.7 8.4 1.0
CA A:ASP87 3.8 8.8 1.0
C A:GLN86 4.0 8.4 1.0
CA A:GLN86 4.0 8.1 1.0
C A:ASP87 4.2 8.8 1.0
CG A:GLN86 4.3 9.4 1.0
CB A:ASN88 4.3 10.6 1.0
OE1 A:GLN86 4.4 11.7 1.0
O A:HOH352 4.5 17.4 1.0
CA A:ASN88 4.6 8.2 1.0
CG A:ASP87 4.6 9.8 1.0
CD A:GLN86 4.8 9.4 1.0

Reference:

R.Zhang, L.Wu, T.Eckert, M.Burg-Roderfeld, M.A.Rojas-Macias, T.Lutteke, V.B.Krylov, D.A.Argunov, A.Datta, P.Markart, A.Guenther, B.Norden, R.Schauer, A.Bhunia, M.A.Enani, M.Billeter, A.J.Scheidig, N.E.Nifantiev, H.C.Siebert. Lysozyme'S Lectin-Like Characteristics Facilitates Its Immune Defense Function. Q. Rev. Biophys. V. 50 E9 2017.
ISSN: ESSN 1469-8994
PubMed: 29233221
DOI: 10.1017/S0033583517000075
Page generated: Sat Jul 12 05:05:45 2025

Last articles

Co in 1U67
Co in 1U5J
Co in 1TUM
Co in 1T0A
Co in 1SJ1
Co in 1TQQ
Co in 1T31
Co in 1T2U
Co in 1STH
Co in 1SJF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy