Chlorine in PDB 5m3e: Macrodomain of Thermus Aquaticus Darg in Complex with Adp-Ribose

The structure of Macrodomain of Thermus Aquaticus Darg in Complex with Adp-Ribose, PDB code: 5m3e was solved by A.Ariza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.45 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	37.410, 60.392, 76.706, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 24.4

The binding sites of Chlorine atom in the Macrodomain of Thermus Aquaticus Darg in Complex with Adp-Ribose (pdb code 5m3e). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Macrodomain of Thermus Aquaticus Darg in Complex with Adp-Ribose, PDB code: 5m3e:

Chlorine binding site 1 out of 1 in the Macrodomain of Thermus Aquaticus Darg in Complex with Adp-Ribose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Macrodomain of Thermus Aquaticus Darg in Complex with Adp-Ribose within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:52.0 occ:1.00 O3D A:APR201 3.0 34.1 1.0 O2D A:APR201 3.4 33.2 1.0 ND2 A:ASN22 3.7 32.9 1.0 CB A:TRP83 3.8 37.2 1.0 CG A:LYS29 3.8 41.1 1.0 N A:GLY28 3.9 36.8 1.0 O A:HOH309 3.9 33.0 1.0 C3D A:APR201 4.0 33.8 1.0 C2D A:APR201 4.0 34.3 1.0 C1D A:APR201 4.2 34.0 1.0 N A:LYS29 4.2 37.2 1.0 CA A:GLY28 4.3 37.8 1.0 CE A:LYS29 4.3 44.4 1.0 O4D A:APR201 4.4 34.3 1.0 C A:GLY28 4.5 38.4 1.0 CG2 A:VAL26 4.6 37.4 1.0 CD A:LYS29 4.6 42.6 1.0 CG A:TRP83 4.6 37.5 1.0 O A:VAL26 4.6 36.2 1.0 C4D A:APR201 4.7 34.3 1.0 CG A:ASN22 4.9 34.1 1.0 CA A:TRP83 4.9 38.0 1.0 C A:MET27 5.0 35.0 1.0

G.Jankevicius, A.Ariza, M.Ahel, I.Ahel. The Toxin-Antitoxin System Dartg Catalyzes Reversible Adp-Ribosylation of Dna. Mol. Cell V. 64 1109 2016.
ISSN: ISSN 1097-4164
PubMed: 27939941
DOI: 10.1016/J.MOLCEL.2016.11.014