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Chlorine in PDB 5m4n: Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase

Enzymatic activity of Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase

All present enzymatic activity of Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase:
2.7.11.2;

Protein crystallography data

The structure of Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase, PDB code: 5m4n was solved by L.M.Baker, P.Brough, A.Surgenor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 93.75 / 2.60
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 108.249, 108.249, 85.221, 90.00, 90.00, 120.00
R / Rfree (%) 20.3 / 26

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase (pdb code 5m4n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase, PDB code: 5m4n:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 5m4n

Go back to Chlorine Binding Sites List in 5m4n
Chlorine binding site 1 out of 5 in the Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:78.1
occ:1.00
CL1 A:TF3402 0.0 78.1 1.0
C2 A:TF3402 1.7 78.7 1.0
C1 A:TF3402 2.6 83.6 1.0
O1 A:TF3402 2.6 73.2 1.0
C4 A:TF3402 2.8 79.6 1.0
ND2 A:ASN142 3.6 68.0 1.0
CD A:PRO64 3.6 70.7 1.0
CG A:PRO64 3.8 80.9 1.0
C3 A:TF3402 3.9 87.1 1.0
CG A:ASN142 3.9 75.2 1.0
CB A:ASN142 3.9 70.7 1.0
C6 A:TF3402 4.0 71.8 1.0
CD2 A:LEU63 4.0 75.5 1.0
C7 A:TF3402 4.1 90.8 1.0
C5 A:TF3402 4.5 86.2 1.0
C11 A:TF3402 4.5 63.8 1.0
OD1 A:ASN142 4.8 81.5 1.0
C8 A:TF3402 4.8 66.9 1.0

Chlorine binding site 2 out of 5 in 5m4n

Go back to Chlorine Binding Sites List in 5m4n
Chlorine binding site 2 out of 5 in the Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:96.8
occ:1.00
O A:HOH577 4.5 69.8 1.0
CD1 A:LEU62 4.8 0.4 1.0

Chlorine binding site 3 out of 5 in 5m4n

Go back to Chlorine Binding Sites List in 5m4n
Chlorine binding site 3 out of 5 in the Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:0.9
occ:1.00
NH1 A:ARG154 3.2 94.9 1.0
CG1 A:ILE155 3.9 53.4 1.0
OH A:TYR328 4.1 64.7 1.0
CG2 A:VAL119 4.2 91.7 1.0
CZ A:ARG154 4.4 80.8 1.0
CG2 A:ILE324 4.5 65.8 1.0
CD1 A:ILE155 4.6 55.0 1.0
CZ A:TYR328 4.7 61.8 1.0
CD A:ARG154 4.9 84.4 1.0
CG A:ARG154 5.0 71.0 1.0

Chlorine binding site 4 out of 5 in 5m4n

Go back to Chlorine Binding Sites List in 5m4n
Chlorine binding site 4 out of 5 in the Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:93.2
occ:1.00
NH2 A:ARG250 3.6 0.2 1.0
CD A:ARG250 4.1 0.9 1.0
CZ A:ARG250 4.1 0.5 1.0
NE A:ARG250 4.3 0.3 1.0
CE2 A:TYR208 4.9 97.6 1.0
NH1 A:ARG250 5.0 0.2 1.0

Chlorine binding site 5 out of 5 in 5m4n

Go back to Chlorine Binding Sites List in 5m4n
Chlorine binding site 5 out of 5 in the Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Application of Off-Rate Screening in the Identification of Novel Pan- Isoform Inhibitors of Pyruvate Dehydrogenase Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:65.8
occ:1.00
O A:LEU338 3.4 54.0 1.0
N A:LEU338 3.5 52.9 1.0
CE2 A:PHE296 4.0 62.4 1.0
C A:LEU338 4.2 54.3 1.0
CA A:LEU338 4.3 54.2 1.0
CA A:GLN337 4.4 55.4 1.0
C A:GLN337 4.4 56.0 1.0
CG2 A:ILE292 4.5 75.0 1.0
CG A:GLN337 4.5 59.8 1.0
CB A:LEU338 4.6 53.6 1.0
CB A:GLN337 4.7 54.2 1.0
CD2 A:PHE296 4.8 63.8 1.0
CZ A:PHE296 4.9 60.5 1.0
NH2 A:ARG326 4.9 78.0 1.0

Reference:

P.A.Brough, L.Baker, S.Bedford, K.Brown, S.Chavda, V.Chell, J.D'alessandro, N.G.Davies, B.Davis, L.Le Strat, A.T.Macias, D.Maddox, P.C.Mahon, A.J.Massey, N.Matassova, S.Mckenna, J.W.Meissner, J.D.Moore, J.B.Murray, C.J.Northfield, C.Parry, R.Parsons, S.D.Roughley, T.Shaw, H.Simmonite, S.Stokes, A.Surgenor, E.Stefaniak, A.Robertson, Y.Wang, P.Webb, N.Whitehead, M.Wood. Application of Off-Rate Screening in the Identification of Novel Pan-Isoform Inhibitors of Pyruvate Dehydrogenase Kinase. J. Med. Chem. V. 60 2271 2017.
ISSN: ISSN 1520-4804
PubMed: 28199108
DOI: 10.1021/ACS.JMEDCHEM.6B01478
Page generated: Sat Jul 12 05:18:33 2025

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