Chlorine in PDB 5mam: Human Insulin in Complex with Serotonin
Protein crystallography data
The structure of Human Insulin in Complex with Serotonin, PDB code: 5mam
was solved by
A.M.Brzozowski,
J.P.Turkenburg,
J.Jiracek,
L.Zakova,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
51.18 /
2.20
|
Space group
|
H 3 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
158.960,
158.960,
76.530,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
20.2 /
28
|
Other elements in 5mam:
The structure of Human Insulin in Complex with Serotonin also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Human Insulin in Complex with Serotonin
(pdb code 5mam). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the
Human Insulin in Complex with Serotonin, PDB code: 5mam:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Chlorine binding site 1 out
of 8 in 5mam
Go back to
Chlorine Binding Sites List in 5mam
Chlorine binding site 1 out
of 8 in the Human Insulin in Complex with Serotonin
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Human Insulin in Complex with Serotonin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl102
b:0.1
occ:0.33
|
ZN
|
B:ZN101
|
2.5
|
45.8
|
0.3
|
NE2
|
B:HIS10
|
3.9
|
39.9
|
1.0
|
CD2
|
B:HIS10
|
4.2
|
39.5
|
1.0
|
|
Chlorine binding site 2 out
of 8 in 5mam
Go back to
Chlorine Binding Sites List in 5mam
Chlorine binding site 2 out
of 8 in the Human Insulin in Complex with Serotonin
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Human Insulin in Complex with Serotonin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl102
b:36.4
occ:0.33
|
ZN
|
D:ZN101
|
2.5
|
33.0
|
0.3
|
NE2
|
D:HIS10
|
3.7
|
31.4
|
1.0
|
CB
|
D:LEU6
|
4.1
|
42.5
|
1.0
|
CD1
|
D:LEU6
|
4.1
|
44.9
|
1.0
|
CD2
|
D:HIS10
|
4.2
|
35.6
|
1.0
|
CG
|
D:LEU6
|
4.7
|
47.2
|
1.0
|
CE1
|
D:HIS10
|
4.8
|
32.7
|
1.0
|
|
Chlorine binding site 3 out
of 8 in 5mam
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Chlorine Binding Sites List in 5mam
Chlorine binding site 3 out
of 8 in the Human Insulin in Complex with Serotonin
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Human Insulin in Complex with Serotonin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl102
b:64.7
occ:1.00
|
ZN
|
F:ZN101
|
2.5
|
36.8
|
1.0
|
NE2
|
F:HIS10
|
3.7
|
32.0
|
1.0
|
NE2
|
L:HIS10
|
3.8
|
32.2
|
1.0
|
NE2
|
N:HIS10
|
3.9
|
37.9
|
1.0
|
CD2
|
L:HIS10
|
4.0
|
32.1
|
1.0
|
CD2
|
F:HIS10
|
4.1
|
34.5
|
1.0
|
CD2
|
N:HIS10
|
4.3
|
33.5
|
1.0
|
O
|
L:HOH109
|
4.4
|
48.6
|
1.0
|
CE1
|
F:HIS10
|
5.0
|
33.3
|
1.0
|
CE1
|
L:HIS10
|
5.0
|
33.1
|
1.0
|
|
Chlorine binding site 4 out
of 8 in 5mam
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Chlorine Binding Sites List in 5mam
Chlorine binding site 4 out
of 8 in the Human Insulin in Complex with Serotonin
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Human Insulin in Complex with Serotonin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Cl101
b:24.3
occ:1.00
|
ZN
|
H:ZN101
|
2.4
|
21.4
|
1.0
|
NE2
|
P:HIS10
|
3.7
|
24.1
|
1.0
|
NE2
|
H:HIS10
|
3.7
|
21.0
|
1.0
|
NE2
|
J:HIS10
|
3.7
|
25.1
|
1.0
|
CB
|
P:LEU6
|
3.9
|
33.5
|
1.0
|
CB
|
J:LEU6
|
4.0
|
27.5
|
1.0
|
CB
|
H:LEU6
|
4.0
|
25.9
|
1.0
|
CD1
|
J:LEU6
|
4.1
|
31.4
|
1.0
|
CD2
|
J:HIS10
|
4.1
|
24.9
|
1.0
|
CD2
|
P:HIS10
|
4.2
|
22.6
|
1.0
|
CD2
|
H:HIS10
|
4.2
|
21.3
|
1.0
|
CD1
|
H:LEU6
|
4.2
|
27.4
|
1.0
|
CG
|
P:LEU6
|
4.2
|
34.3
|
1.0
|
CG
|
J:LEU6
|
4.6
|
28.0
|
1.0
|
CD2
|
P:LEU6
|
4.6
|
34.2
|
1.0
|
CE1
|
H:HIS10
|
4.7
|
21.3
|
1.0
|
CG
|
H:LEU6
|
4.7
|
27.0
|
1.0
|
CE1
|
P:HIS10
|
4.7
|
24.2
|
1.0
|
CE1
|
J:HIS10
|
4.8
|
25.2
|
1.0
|
C
|
P:LEU6
|
4.9
|
29.2
|
1.0
|
O
|
P:LEU6
|
4.9
|
26.2
|
1.0
|
O
|
H:LEU6
|
5.0
|
23.4
|
1.0
|
O
|
J:LEU6
|
5.0
|
25.5
|
1.0
|
|
Chlorine binding site 5 out
of 8 in 5mam
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Chlorine Binding Sites List in 5mam
Chlorine binding site 5 out
of 8 in the Human Insulin in Complex with Serotonin
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Human Insulin in Complex with Serotonin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
T:Cl102
b:60.4
occ:1.00
|
ZN
|
T:ZN101
|
2.5
|
36.8
|
1.0
|
NE2
|
T:HIS10
|
3.6
|
32.2
|
1.0
|
NE2
|
Z:HIS10
|
3.8
|
34.0
|
1.0
|
CD2
|
T:HIS10
|
3.9
|
31.2
|
1.0
|
NE2
|
V:HIS10
|
4.0
|
32.6
|
1.0
|
CD2
|
Z:HIS10
|
4.2
|
32.7
|
1.0
|
CD2
|
V:HIS10
|
4.4
|
31.1
|
1.0
|
CE1
|
T:HIS10
|
4.8
|
35.1
|
1.0
|
|
Chlorine binding site 6 out
of 8 in 5mam
Go back to
Chlorine Binding Sites List in 5mam
Chlorine binding site 6 out
of 8 in the Human Insulin in Complex with Serotonin
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Human Insulin in Complex with Serotonin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Cl101
b:27.4
occ:1.00
|
ZN
|
R:ZN101
|
2.4
|
24.1
|
1.0
|
NE2
|
X:HIS10
|
3.5
|
24.9
|
1.0
|
NE2
|
1:HIS10
|
3.6
|
23.1
|
1.0
|
NE2
|
R:HIS10
|
3.7
|
27.1
|
1.0
|
CB
|
X:LEU6
|
3.9
|
27.8
|
1.0
|
CD2
|
X:HIS10
|
4.0
|
24.1
|
1.0
|
CB
|
1:LEU6
|
4.1
|
28.4
|
1.0
|
CD2
|
1:HIS10
|
4.1
|
23.5
|
1.0
|
CD1
|
1:LEU6
|
4.1
|
30.5
|
1.0
|
CB
|
R:LEU6
|
4.1
|
24.5
|
1.0
|
CD2
|
R:HIS10
|
4.2
|
25.3
|
1.0
|
CD1
|
X:LEU6
|
4.2
|
33.8
|
1.0
|
CD1
|
R:LEU6
|
4.2
|
26.8
|
1.0
|
CE1
|
1:HIS10
|
4.6
|
23.0
|
1.0
|
CE1
|
X:HIS10
|
4.6
|
28.0
|
1.0
|
CG
|
1:LEU6
|
4.7
|
30.2
|
1.0
|
CG
|
X:LEU6
|
4.7
|
32.2
|
1.0
|
CG
|
R:LEU6
|
4.7
|
27.0
|
1.0
|
O
|
X:LEU6
|
4.7
|
29.3
|
1.0
|
CE1
|
R:HIS10
|
4.8
|
27.9
|
1.0
|
C
|
X:LEU6
|
4.8
|
27.0
|
1.0
|
CA
|
X:LEU6
|
5.0
|
29.5
|
1.0
|
C
|
R:LEU6
|
5.0
|
27.4
|
1.0
|
|
Chlorine binding site 7 out
of 8 in 5mam
Go back to
Chlorine Binding Sites List in 5mam
Chlorine binding site 7 out
of 8 in the Human Insulin in Complex with Serotonin
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Human Insulin in Complex with Serotonin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Cl102
b:72.7
occ:1.00
|
ZN
|
3:ZN101
|
2.5
|
32.4
|
0.3
|
NE2
|
3:HIS10
|
3.3
|
28.7
|
1.0
|
CD2
|
3:HIS10
|
3.8
|
27.4
|
1.0
|
CE1
|
3:HIS10
|
4.5
|
28.9
|
1.0
|
O
|
3:HOH211
|
4.7
|
47.2
|
1.0
|
|
Chlorine binding site 8 out
of 8 in 5mam
Go back to
Chlorine Binding Sites List in 5mam
Chlorine binding site 8 out
of 8 in the Human Insulin in Complex with Serotonin
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Human Insulin in Complex with Serotonin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
5:Cl102
b:29.3
occ:0.33
|
ZN
|
5:ZN101
|
2.5
|
26.1
|
0.3
|
NE2
|
5:HIS10
|
3.7
|
31.9
|
1.0
|
CD1
|
5:LEU6
|
4.0
|
33.5
|
1.0
|
CB
|
5:LEU6
|
4.0
|
30.7
|
1.0
|
CD2
|
5:HIS10
|
4.1
|
32.2
|
1.0
|
CG
|
5:LEU6
|
4.5
|
31.6
|
1.0
|
CE1
|
5:HIS10
|
4.7
|
33.0
|
1.0
|
|
Reference:
V.Palivec,
C.M.Viola,
M.Kozak,
T.R.Ganderton,
K.Krizkova,
J.P.Turkenburg,
P.Haluskova,
L.Zakova,
J.Jiracek,
P.Jungwirth,
A.M.Brzozowski.
Computational and Structural Evidence For Neurotransmitter-Mediated Modulation of the Oligomeric States of Human Insulin in Storage Granules. J. Biol. Chem. V. 292 8342 2017.
ISSN: ESSN 1083-351X
PubMed: 28348075
DOI: 10.1074/JBC.M117.775924
Page generated: Fri Jul 26 12:32:57 2024
|