Chlorine in PDB 5mh2: Crystal Structure of A DM9 Domain Containing Protein From Crassostrea Gigas with D22A Mutation

The structure of Crystal Structure of A DM9 Domain Containing Protein From Crassostrea Gigas with D22A Mutation, PDB code: 5mh2 was solved by T.Weinert, E.Warkentin, G.Peng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.60 / 1.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	37.160, 56.530, 105.530, 90.00, 93.41, 90.00
R / Rfree (%)	14.5 / 18.2

The binding sites of Chlorine atom in the Crystal Structure of A DM9 Domain Containing Protein From Crassostrea Gigas with D22A Mutation (pdb code 5mh2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A DM9 Domain Containing Protein From Crassostrea Gigas with D22A Mutation, PDB code: 5mh2:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of A DM9 Domain Containing Protein From Crassostrea Gigas with D22A Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A DM9 Domain Containing Protein From Crassostrea Gigas with D22A Mutation within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:18.2 occ:1.00 O A:HOH342 3.2 14.9 1.0 NE2 A:HIS47 3.2 13.7 1.0 O A:HOH393 3.2 18.5 1.0 CB A:ALA22 3.6 13.8 1.0 CD2 A:LEU48 3.9 13.8 1.0 CD2 A:LEU28 4.0 11.2 1.0 CD2 A:HIS47 4.0 13.3 1.0 NZ A:LYS43 4.2 12.4 1.0 CE A:LYS43 4.2 10.6 1.0 CA A:ALA22 4.2 11.9 1.0 CD1 A:LEU48 4.3 11.8 1.0 CE1 A:HIS47 4.3 13.3 1.0 CD1 A:LEU28 4.3 10.0 1.0 CG A:LEU48 4.5 11.1 1.0 CG A:LEU28 4.6 9.2 1.0 O A:HOH347 4.8 17.9 1.0 CD A:LYS43 4.9 10.8 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of A DM9 Domain Containing Protein From Crassostrea Gigas with D22A Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A DM9 Domain Containing Protein From Crassostrea Gigas with D22A Mutation within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl201 b:25.0 occ:1.00 O C:HOH399 3.3 16.3 1.0 NE2 C:HIS47 3.3 15.3 1.0 O C:HOH344 3.4 15.9 1.0 CB C:ALA22 3.5 14.5 1.0 CD2 C:LEU28 3.9 10.6 1.0 CD2 C:HIS47 4.1 16.3 1.0 CD2 C:LEU48 4.1 15.3 1.0 CD1 C:LEU48 4.1 14.1 1.0 CE C:LYS43 4.2 12.5 1.0 NZ C:LYS43 4.2 13.6 1.0 CE1 C:HIS47 4.3 15.6 1.0 CA C:ALA22 4.3 13.5 1.0 CD1 C:LEU28 4.3 10.2 1.0 CG C:LEU48 4.5 14.6 1.0 CG C:LEU28 4.6 9.8 1.0 O C:HOH331 4.8 19.4 1.0 CD C:LYS43 4.9 12.1 1.0

S.Jiang, L.Wang, M.Huang, Z.Jia, T.Weinert, E.Warkentin, C.Liu, X.Song, H.Zhang, J.Witt, L.Qiu, G.Peng, L.Song. DM9 Domain Containing Protein Functions As A Pattern Recognition Receptor with Broad Microbial Recognition Spectrum. Front Immunol V. 8 1607 2017.
ISSN: ESSN 1664-3224
PubMed: 29238341
DOI: 10.3389/FIMMU.2017.01607