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Chlorine in PDB 5mvm: X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol

Protein crystallography data

The structure of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol, PDB code: 5mvm was solved by Z.Fourati, M.Delarue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 181.760, 132.510, 160.520, 90.00, 102.72, 90.00
R / Rfree (%) 19.5 / 20.8

Other elements in 5mvm:

The structure of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol also contains other interesting chemical elements:

Sodium (Na) 7 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol (pdb code 5mvm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol, PDB code: 5mvm:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 5mvm

Go back to Chlorine Binding Sites List in 5mvm
Chlorine binding site 1 out of 5 in the X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:73.3
occ:1.00
O A:HOH627 2.9 78.9 1.0
N A:PHE78 3.3 57.7 1.0
NH1 A:ARG85 3.3 49.9 1.0
N A:ARG85 3.5 74.7 1.0
CD2 A:PHE78 3.6 61.6 1.0
CG A:ARG85 3.6 63.9 1.0
CB A:PHE78 3.8 57.9 1.0
CA A:ALA84 3.9 77.5 1.0
CA A:ARG77 4.0 54.9 1.0
CG2 A:VAL81 4.1 61.6 1.0
CB A:ARG85 4.1 69.2 1.0
C A:ARG77 4.1 62.4 1.0
CA A:PHE78 4.1 56.2 1.0
CG A:PHE78 4.2 59.5 1.0
C A:ALA84 4.2 80.3 1.0
CB A:ALA84 4.2 78.7 1.0
O A:PHE78 4.3 59.3 1.0
CD A:ARG85 4.4 54.6 1.0
CA A:ARG85 4.4 73.6 1.0
CZ A:ARG85 4.5 68.6 1.0
CB A:ARG77 4.5 55.5 1.0
CE2 A:PHE78 4.6 64.0 1.0
C A:PHE78 4.8 58.0 1.0
CG A:ARG77 4.8 65.7 1.0
NE A:ARG85 4.9 59.8 1.0

Chlorine binding site 2 out of 5 in 5mvm

Go back to Chlorine Binding Sites List in 5mvm
Chlorine binding site 2 out of 5 in the X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl503

b:0.2
occ:1.00
O B:HOH627 2.9 35.7 1.0
NH1 B:ARG85 3.6 61.4 1.0
CB B:ALA84 3.7 86.2 1.0
CG B:ARG85 4.1 78.6 1.0
N B:ARG85 4.2 81.8 1.0
CA B:ALA84 4.2 84.7 1.0
CZ B:ARG85 4.3 76.4 1.0
CG B:ARG77 4.4 57.8 1.0
O B:ILE76 4.4 62.0 1.0
C B:ALA84 4.6 88.0 1.0
CA B:ARG77 4.6 52.5 1.0
OD2 A:ASP88 4.7 0.7 1.0
CB B:ARG77 4.8 49.1 1.0
O B:ARG85 4.9 85.5 1.0
NE B:ARG85 4.9 76.4 1.0
NH2 B:ARG85 5.0 48.0 1.0

Chlorine binding site 3 out of 5 in 5mvm

Go back to Chlorine Binding Sites List in 5mvm
Chlorine binding site 3 out of 5 in the X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl402

b:82.5
occ:1.00
N C:PHE78 3.2 58.6 1.0
NH1 C:ARG85 3.4 78.3 1.0
N C:ARG85 3.6 79.9 1.0
CD2 C:PHE78 3.7 66.2 1.0
CG C:ARG85 3.7 77.8 1.0
CB C:PHE78 3.9 60.6 1.0
CA C:ARG77 3.9 56.0 1.0
CA C:ALA84 4.0 82.3 1.0
C C:ARG77 4.0 61.5 1.0
CA C:PHE78 4.1 58.7 1.0
CG2 C:VAL81 4.1 60.5 1.0
O C:PHE78 4.2 68.4 1.0
CG C:PHE78 4.3 63.1 1.0
CB C:ARG77 4.3 54.1 1.0
CB C:ARG85 4.3 75.3 1.0
CB C:ALA84 4.3 83.9 1.0
O C:HOH532 4.3 71.0 1.0
C C:ALA84 4.3 83.9 1.0
CD C:ARG85 4.5 73.2 1.0
CZ C:ARG85 4.5 89.6 1.0
CA C:ARG85 4.6 79.1 1.0
C C:PHE78 4.7 65.2 1.0
CG C:ARG77 4.7 64.7 1.0
CE2 C:PHE78 4.8 68.3 1.0
O C:ILE76 5.0 63.2 1.0
NE C:ARG85 5.0 74.9 1.0

Chlorine binding site 4 out of 5 in 5mvm

Go back to Chlorine Binding Sites List in 5mvm
Chlorine binding site 4 out of 5 in the X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl403

b:68.3
occ:1.00
N D:PHE78 3.1 52.2 1.0
NH1 D:ARG85 3.8 71.0 1.0
CA D:ARG77 3.8 51.2 1.0
N D:ARG85 3.8 73.3 1.0
CB D:PHE78 3.8 55.0 1.0
CG2 D:VAL81 3.9 60.2 1.0
O D:PHE78 3.9 57.4 1.0
CA D:ALA84 3.9 72.3 1.0
C D:ARG77 3.9 57.3 1.0
CD2 D:PHE78 3.9 60.2 1.0
CA D:PHE78 4.0 52.3 1.0
CB D:ARG77 4.1 49.8 1.0
CG D:ARG85 4.2 69.9 1.0
CB D:ALA84 4.2 73.4 1.0
CG D:ARG77 4.3 51.9 1.0
CG D:PHE78 4.4 58.0 1.0
C D:ALA84 4.4 77.2 1.0
C D:PHE78 4.4 56.4 1.0
CB D:ARG85 4.6 69.2 1.0
CA D:ARG85 4.8 73.0 1.0
CZ D:ARG85 5.0 83.0 1.0
CD D:ARG85 5.0 63.7 1.0
N D:ALA84 5.0 73.0 1.0

Chlorine binding site 5 out of 5 in 5mvm

Go back to Chlorine Binding Sites List in 5mvm
Chlorine binding site 5 out of 5 in the X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl404

b:72.2
occ:1.00
N E:PHE78 3.1 58.6 1.0
CB E:PHE78 3.7 61.2 1.0
N E:ARG85 3.7 72.7 1.0
NH1 E:ARG85 3.8 75.3 1.0
CD2 E:PHE78 3.8 66.6 1.0
CG2 E:VAL81 3.8 69.5 1.0
O E:PHE78 3.9 65.5 1.0
CA E:PHE78 3.9 59.0 1.0
CA E:ALA84 3.9 79.1 1.0
CA E:ARG77 3.9 55.7 1.0
C E:ARG77 3.9 61.1 1.0
CG E:ARG85 4.1 64.5 1.0
CB E:ARG77 4.2 56.5 1.0
CB E:ALA84 4.2 80.5 1.0
CG E:PHE78 4.3 64.3 1.0
C E:ALA84 4.4 80.6 1.0
C E:PHE78 4.4 64.6 1.0
CB E:ARG85 4.5 62.8 1.0
CA E:ARG85 4.8 70.1 1.0
CD E:ARG85 4.9 69.5 1.0
CE2 E:PHE78 4.9 68.4 1.0
CZ E:ARG85 4.9 87.1 1.0

Reference:

Z.Fourati, M.Delarue. X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol To Be Published.
Page generated: Fri Jul 26 12:57:51 2024

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