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Chlorine in PDB 5mwf: Human JAGGED2 C2-EGF2

Protein crystallography data

The structure of Human JAGGED2 C2-EGF2, PDB code: 5mwf was solved by R.J.Suckling, P.A.Handford, S.M.Lea, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.01 / 2.80
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 62.628, 92.929, 97.004, 71.68, 83.16, 82.68
R / Rfree (%) 21.7 / 27.5

Other elements in 5mwf:

The structure of Human JAGGED2 C2-EGF2 also contains other interesting chemical elements:

Calcium (Ca) 17 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human JAGGED2 C2-EGF2 (pdb code 5mwf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Human JAGGED2 C2-EGF2, PDB code: 5mwf:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5mwf

Go back to Chlorine Binding Sites List in 5mwf
Chlorine binding site 1 out of 2 in the Human JAGGED2 C2-EGF2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human JAGGED2 C2-EGF2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl408

b:46.2
occ:1.00
NE A:ARG38 3.3 33.6 1.0
NH1 A:ARG38 3.7 40.1 1.0
CZ A:ARG38 3.9 40.4 1.0
CD A:ARG38 4.3 30.7 1.0
CG1 A:VAL40 4.5 40.6 1.0
NE2 A:HIS189 4.6 47.0 1.0
CG2 A:VAL40 4.6 33.3 1.0
CD2 A:HIS189 4.9 47.2 1.0

Chlorine binding site 2 out of 2 in 5mwf

Go back to Chlorine Binding Sites List in 5mwf
Chlorine binding site 2 out of 2 in the Human JAGGED2 C2-EGF2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human JAGGED2 C2-EGF2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl408

b:57.5
occ:1.00
NE B:ARG38 3.3 49.1 1.0
NH1 B:ARG38 3.8 48.1 1.0
CZ B:ARG38 4.0 51.6 1.0
O B:HOH527 4.1 29.0 1.0
CD B:ARG38 4.2 44.3 1.0
NE2 B:HIS189 4.3 52.2 1.0
CG1 B:VAL40 4.5 49.6 1.0
CD2 B:HIS189 4.7 50.4 1.0
CG2 B:VAL40 4.7 46.1 1.0

Reference:

R.J.Suckling, B.Korona, P.Whiteman, C.Chillakuri, L.Holt, P.A.Handford, S.M.Lea. Structural and Functional Dissection of the Interplay Between Lipid and Notch Binding By Human Notch Ligands. Embo J. V. 36 2204 2017.
ISSN: ESSN 1460-2075
PubMed: 28572448
DOI: 10.15252/EMBJ.201796632
Page generated: Sat Jul 12 05:42:32 2025

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