Atomistry » Chlorine » PDB 5n75-5ncw » 5n9l
Atomistry »
  Chlorine »
    PDB 5n75-5ncw »
      5n9l »

Chlorine in PDB 5n9l: Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive Dibenzofuran Inhibitor Tf (4B)

Enzymatic activity of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive Dibenzofuran Inhibitor Tf (4B)

All present enzymatic activity of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive Dibenzofuran Inhibitor Tf (4B):
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive Dibenzofuran Inhibitor Tf (4B), PDB code: 5n9l was solved by A.Schnitzler, A.Gratz, A.Bollacke, M.Weyrich, U.Kucklaender, B.Wuensch, C.Goetz, K.Niefind, J.Jose, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.14 / 1.79
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.437, 45.706, 63.187, 90.00, 110.94, 90.00
R / Rfree (%) 16.4 / 19.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive Dibenzofuran Inhibitor Tf (4B) (pdb code 5n9l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive Dibenzofuran Inhibitor Tf (4B), PDB code: 5n9l:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5n9l

Go back to Chlorine Binding Sites List in 5n9l
Chlorine binding site 1 out of 2 in the Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive Dibenzofuran Inhibitor Tf (4B)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive Dibenzofuran Inhibitor Tf (4B) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:42.6
occ:1.00
CL1 A:8QH401 0.0 42.6 1.0
CAU A:8QH401 1.7 35.9 1.0
CAV A:8QH401 2.7 34.9 1.0
CAS A:8QH401 2.7 35.4 1.0
OAC A:8QH401 2.9 39.6 1.0
CL2 A:8QH401 3.1 49.9 1.0
O A:VAL116 3.7 36.5 1.0
SD A:MET163 3.8 36.8 1.0
CAZ A:8QH401 3.9 23.3 1.0
CAK A:8QH401 4.0 31.7 1.0
CD1 A:LEU45 4.0 35.6 1.0
CB A:ASN118 4.2 42.0 1.0
CAY A:8QH401 4.5 23.5 1.0
CG2 A:VAL66 4.8 31.4 1.0
C A:VAL116 4.9 35.9 1.0
N A:ASN118 4.9 35.5 1.0
CG A:MET163 4.9 31.8 1.0

Chlorine binding site 2 out of 2 in 5n9l

Go back to Chlorine Binding Sites List in 5n9l
Chlorine binding site 2 out of 2 in the Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive Dibenzofuran Inhibitor Tf (4B)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive Dibenzofuran Inhibitor Tf (4B) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:49.9
occ:1.00
CL2 A:8QH401 0.0 49.9 1.0
CAV A:8QH401 1.7 34.9 1.0
CAZ A:8QH401 2.7 23.3 1.0
CAU A:8QH401 2.7 35.9 1.0
OAO A:8QH401 3.1 23.1 1.0
CL1 A:8QH401 3.1 42.6 1.0
CAY A:8QH401 3.9 23.5 1.0
SD A:MET163 3.9 36.8 1.0
CAS A:8QH401 4.0 35.4 1.0
CAX A:8QH401 4.3 23.1 1.0
CD1 A:LEU45 4.4 35.6 1.0
CG1 A:VAL53 4.4 31.6 1.0
CAK A:8QH401 4.5 31.7 1.0
CE A:MET163 4.6 38.5 1.0
CB A:LEU45 4.6 30.8 1.0
CD1 A:ILE174 4.8 21.6 1.0
CAW A:8QH401 4.8 24.5 1.0
CE1 A:HIS160 4.8 37.1 0.5

Reference:

A.Schnitzler, A.Gratz, A.Bollacke, M.Weyrich, U.Kucklander, B.Wunsch, C.Gotz, K.Niefind, J.Jose. A Pi-Halogen Bond of Dibenzofuranones with the Gatekeeper PHE113 in Human Protein Kinase CK2 Leads to Potent Tight Binding Inhibitors. Pharmaceuticals V. 11 2018.
ISSN: ESSN 1424-8247
PubMed: 29462988
DOI: 10.3390/PH11010023
Page generated: Sat Jul 12 05:56:14 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy