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Chlorine in PDB 5n9n: Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A)

Enzymatic activity of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A)

All present enzymatic activity of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A):
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A), PDB code: 5n9n was solved by A.Schnitzler, A.Gratz, A.Bollacke, M.Weyrich, U.Kucklaender, B.Wuensch, C.Goetz, K.Niefind, J.Jose, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.17 / 1.84
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.477, 45.505, 63.489, 90.00, 110.97, 90.00
R / Rfree (%) 16.7 / 20.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A) (pdb code 5n9n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A), PDB code: 5n9n:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5n9n

Go back to Chlorine Binding Sites List in 5n9n
Chlorine binding site 1 out of 2 in the Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:34.1
occ:1.00
CL1 A:KC5401 0.0 34.1 1.0
CAR A:KC5401 1.7 25.4 1.0
CAM A:KC5401 2.7 28.8 1.0
CAT A:KC5401 2.7 22.9 1.0
OAC A:KC5401 2.9 28.6 1.0
NZ A:LYS68 3.3 27.2 1.0
CE A:LYS68 3.4 31.3 1.0
CG A:ASP175 3.5 40.4 1.0
OD2 A:ASP175 3.6 40.0 1.0
CH3 A:ACT405 3.7 63.2 1.0
CD A:LYS68 3.7 32.2 1.0
CB A:ASP175 3.8 29.4 1.0
OD1 A:ASP175 3.8 31.1 1.0
O A:HOH627 3.8 45.6 1.0
C A:ACT405 3.9 65.0 1.0
O A:HOH506 3.9 33.2 1.0
CG2 A:VAL53 3.9 30.4 1.0
CAX A:KC5401 3.9 23.7 1.0
CAV A:KC5401 4.0 29.1 1.0
OXT A:ACT405 4.1 66.4 1.0
CA A:ASP175 4.2 32.1 1.0
OG A:SER51 4.2 33.0 1.0
O A:ACT405 4.4 64.8 1.0
CBA A:KC5401 4.4 27.5 1.0
CG A:LYS68 4.5 27.1 1.0
N A:ASP175 4.7 29.6 1.0

Chlorine binding site 2 out of 2 in 5n9n

Go back to Chlorine Binding Sites List in 5n9n
Chlorine binding site 2 out of 2 in the Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:32.6
occ:1.00
CL2 A:KC5401 0.0 32.6 1.0
CAV A:KC5401 1.7 29.1 1.0
CAT A:KC5401 2.7 22.9 1.0
CBA A:KC5401 2.7 27.5 1.0
OAC A:KC5401 2.9 28.6 1.0
CAY A:KC5401 3.2 24.3 1.0
CAL A:KC5401 3.3 35.3 1.0
CB A:ILE174 3.5 32.2 1.0
CZ A:PHE113 3.6 27.9 1.0
CE1 A:PHE113 3.6 28.8 1.0
CE2 A:PHE113 3.6 31.1 1.0
CD1 A:PHE113 3.6 27.0 1.0
CD2 A:PHE113 3.6 32.3 1.0
CG A:PHE113 3.6 30.1 1.0
CG2 A:ILE174 3.7 24.9 1.0
CG1 A:ILE95 3.8 29.4 1.0
CG2 A:ILE95 3.8 25.3 1.0
O A:HOH593 3.8 24.8 1.0
CAX A:KC5401 3.9 23.7 1.0
CAR A:KC5401 4.0 25.4 1.0
N A:ASP175 4.0 29.6 1.0
CA A:ILE174 4.2 22.9 1.0
CB A:ILE95 4.3 28.6 1.0
CB A:PHE113 4.4 27.8 1.0
CAM A:KC5401 4.5 28.8 1.0
CAZ A:KC5401 4.5 24.5 1.0
CAG A:KC5401 4.6 34.6 1.0
C A:ILE174 4.7 26.1 1.0
CD1 A:ILE95 4.7 28.6 1.0
CG1 A:ILE174 4.7 23.4 1.0
OAP A:KC5401 4.8 27.2 1.0
CD1 A:ILE174 4.8 25.5 1.0
CA A:ASP175 4.9 32.1 1.0

Reference:

A.Schnitzler, A.Gratz, A.Bollacke, M.Weyrich, U.Kucklander, B.Wunsch, C.Gotz, K.Niefind, J.Jose. A Pi-Halogen Bond of Dibenzofuranones with the Gatekeeper PHE113 in Human Protein Kinase CK2 Leads to Potent Tight Binding Inhibitors. Pharmaceuticals V. 11 2018.
ISSN: ESSN 1424-8247
PubMed: 29462988
DOI: 10.3390/PH11010023
Page generated: Sat Jul 12 05:56:15 2025

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