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Chlorine in PDB 5nal: The Crystal Structure of Inhibitor-15 Covalently Bound to PDE6D

Protein crystallography data

The structure of The Crystal Structure of Inhibitor-15 Covalently Bound to PDE6D, PDB code: 5nal was solved by E.K.Fansa, P.Martin-Gago, H.Waldmann, A.Wittinghofer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.03 / 2.20
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 56.070, 56.070, 115.080, 90.00, 90.00, 120.00
R / Rfree (%) 19.5 / 24.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of Inhibitor-15 Covalently Bound to PDE6D (pdb code 5nal). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the The Crystal Structure of Inhibitor-15 Covalently Bound to PDE6D, PDB code: 5nal:

Chlorine binding site 1 out of 1 in 5nal

Go back to Chlorine Binding Sites List in 5nal
Chlorine binding site 1 out of 1 in the The Crystal Structure of Inhibitor-15 Covalently Bound to PDE6D


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Inhibitor-15 Covalently Bound to PDE6D within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:37.5
occ:1.00
CL1 B:8RQ201 0.0 37.5 1.0
CAS B:8RQ201 1.7 30.4 1.0
CAT B:8RQ201 2.7 29.1 1.0
CAR B:8RQ201 2.7 28.7 1.0
CZ B:PHE133 3.4 31.8 1.0
CD1 B:LEU17 3.6 27.5 1.0
CE1 B:PHE133 3.9 32.8 1.0
CAU B:8RQ201 4.0 27.8 1.0
CAQ B:8RQ201 4.0 27.6 1.0
CG2 B:THR131 4.1 21.3 1.0
CD1 B:LEU63 4.1 25.2 1.0
CE2 B:PHE133 4.4 33.5 1.0
CB B:SER39 4.5 22.5 1.0
CAM B:8RQ201 4.5 27.0 1.0
OG1 B:THR131 4.6 19.6 1.0
N B:SER39 4.7 21.3 1.0
CB B:THR131 4.7 20.7 1.0
CA B:SER39 4.8 22.1 1.0
CD1 B:LEU76 4.8 26.1 1.0
NE2 B:GLN78 4.9 19.4 1.0
CE B:MET20 4.9 28.2 1.0
SD B:MET20 5.0 31.1 1.0

Reference:

P.Martin-Gago, E.K.Fansa, M.Winzker, S.Murarka, P.Janning, C.Schultz-Fademrecht, M.Baumann, A.Wittinghofer, H.Waldmann. Covalent Protein Labeling at Glutamic Acids. Cell Chem Biol V. 24 589 2017.
ISSN: ESSN 2451-9456
PubMed: 28434875
DOI: 10.1016/J.CHEMBIOL.2017.03.015
Page generated: Sat Jul 12 05:58:30 2025

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