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Chlorine in PDB 5nkp: Crystal Structure of the Human KLHL3 Kelch Domain in Complex with A WNK3 Peptide

Enzymatic activity of Crystal Structure of the Human KLHL3 Kelch Domain in Complex with A WNK3 Peptide

All present enzymatic activity of Crystal Structure of the Human KLHL3 Kelch Domain in Complex with A WNK3 Peptide:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of the Human KLHL3 Kelch Domain in Complex with A WNK3 Peptide, PDB code: 5nkp was solved by Z.Chen, F.J.Sorrell, D.M.Pinkas, E.Williams, S.Mathea, S.Goubin, F.Vondelft, C.H.Arrowsmith, A.M.Edwards, N.Burgess-Brown, C.Bountra, A.Bullock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.03 / 2.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 84.660, 169.720, 123.860, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 24.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Human KLHL3 Kelch Domain in Complex with A WNK3 Peptide (pdb code 5nkp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of the Human KLHL3 Kelch Domain in Complex with A WNK3 Peptide, PDB code: 5nkp:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5nkp

Go back to Chlorine Binding Sites List in 5nkp
Chlorine binding site 1 out of 3 in the Crystal Structure of the Human KLHL3 Kelch Domain in Complex with A WNK3 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Human KLHL3 Kelch Domain in Complex with A WNK3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl602

b:33.5
occ:1.00
OG A:SER385 2.9 33.0 1.0
NH1 A:ARG339 3.1 34.2 1.0
CB A:SER385 3.4 32.8 1.0
NE A:ARG360 3.6 34.0 1.0
NH2 A:ARG360 3.6 34.6 1.0
CD A:ARG339 3.6 33.7 1.0
CG2 A:THR386 3.7 33.3 1.0
CG2 D:THR541 3.9 34.2 1.0
CD2 A:PHE402 3.9 34.1 1.0
CA D:THR541 4.0 34.5 1.0
CZ A:ARG360 4.0 34.5 1.0
CB A:PHE402 4.1 33.4 1.0
CZ A:ARG339 4.1 34.3 1.0
CB D:THR541 4.2 34.3 1.0
C A:SER385 4.3 32.6 1.0
NE A:ARG339 4.3 34.1 1.0
OG1 A:THR386 4.4 33.1 1.0
CA A:SER385 4.5 32.5 1.0
CG A:PHE402 4.5 33.9 1.0
O A:SER385 4.5 32.6 1.0
N A:THR386 4.6 32.6 1.0
CB A:THR386 4.6 33.1 1.0
CG A:ARG360 4.6 33.4 1.0
CD A:ARG360 4.7 33.9 1.0
O D:GLU540 4.7 35.0 1.0
N D:GLU542 4.8 34.6 1.0
N D:THR541 4.8 34.8 1.0
CG A:ARG339 4.9 33.6 1.0
C D:THR541 4.9 34.8 1.0
CE2 A:PHE402 4.9 34.7 1.0
CB A:ARG339 5.0 33.2 1.0

Chlorine binding site 2 out of 3 in 5nkp

Go back to Chlorine Binding Sites List in 5nkp
Chlorine binding site 2 out of 3 in the Crystal Structure of the Human KLHL3 Kelch Domain in Complex with A WNK3 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Human KLHL3 Kelch Domain in Complex with A WNK3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl603

b:36.7
occ:1.00
O A:SER548 3.8 38.3 1.0
OD1 A:ASN550 3.8 37.0 1.0
OD1 A:ASP545 3.9 36.5 1.0
CG A:ASP545 4.0 36.4 1.0
C A:SER548 4.1 38.3 1.0
CB A:ASP545 4.2 37.0 1.0
O A:GLY547 4.3 37.3 1.0
NH2 A:ARG528 4.3 35.9 1.0
C A:GLY547 4.3 37.4 1.0
N A:SER548 4.4 37.8 1.0
OD2 A:ASP545 4.5 36.0 1.0
CA A:SER548 4.5 38.2 1.0
N A:CYS549 4.8 38.5 1.0
CG A:ASN550 4.8 37.5 1.0

Chlorine binding site 3 out of 3 in 5nkp

Go back to Chlorine Binding Sites List in 5nkp
Chlorine binding site 3 out of 3 in the Crystal Structure of the Human KLHL3 Kelch Domain in Complex with A WNK3 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Human KLHL3 Kelch Domain in Complex with A WNK3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl601

b:31.3
occ:1.00
OG B:SER385 2.6 31.7 1.0
NH1 B:ARG339 3.1 31.7 1.0
CB B:SER385 3.2 31.7 1.0
NE B:ARG360 3.5 31.9 1.0
CD B:ARG339 3.7 31.7 1.0
CG2 B:THR386 3.7 30.9 1.0
NH2 B:ARG360 3.7 31.8 1.0
CD2 B:PHE402 3.9 30.9 1.0
CZ B:ARG360 4.0 32.0 1.0
CG2 C:THR541 4.0 31.0 1.0
CZ B:ARG339 4.2 31.8 1.0
CA C:THR541 4.3 31.0 1.0
C B:SER385 4.3 31.3 1.0
CG B:ARG360 4.3 32.2 1.0
NE B:ARG339 4.4 31.8 1.0
CA B:SER385 4.4 31.7 1.0
CB C:THR541 4.5 30.9 1.0
CD B:ARG360 4.5 32.3 1.0
CB B:PHE402 4.5 30.6 1.0
OG1 B:THR386 4.6 30.7 1.0
N B:THR386 4.6 31.4 1.0
O B:SER385 4.6 31.1 1.0
CE2 B:PHE402 4.7 31.0 1.0
CG B:PHE402 4.7 30.6 1.0
CB B:THR386 4.7 30.9 1.0
CD1 B:PHE355 4.8 32.9 1.0
CG B:ARG339 4.9 31.9 1.0
O C:GLU540 4.9 31.5 1.0
CB B:ARG339 4.9 32.0 1.0
N C:THR541 4.9 31.3 1.0
CG B:PHE355 5.0 32.9 1.0
O B:PHE402 5.0 31.3 1.0
CB B:PHE355 5.0 32.9 1.0

Reference:

Z.Chen, F.J.Sorrell, D.M.Pinkas, E.Williams, S.Mathea, S.Goubin, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, N.Burgess-Brown, C.Bountra, A.Bullock. Crystal Structure of the Human KLHL3 Kelch Domain in Complex with A WNK3 Peptide To Be Published.
Page generated: Sat Jul 12 06:11:44 2025

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