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Chlorine in PDB 5nof: Anthranilate Phosphoribosyltransferase From Thermococcus Kodakaraensis

Enzymatic activity of Anthranilate Phosphoribosyltransferase From Thermococcus Kodakaraensis

All present enzymatic activity of Anthranilate Phosphoribosyltransferase From Thermococcus Kodakaraensis:
2.4.2.18;

Protein crystallography data

The structure of Anthranilate Phosphoribosyltransferase From Thermococcus Kodakaraensis, PDB code: 5nof was solved by S.Perveen, N.Rashid, A.C.Papageorgiou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.19 / 2.42
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.605, 81.389, 179.392, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 25.5

Other elements in 5nof:

The structure of Anthranilate Phosphoribosyltransferase From Thermococcus Kodakaraensis also contains other interesting chemical elements:

Zinc (Zn) 6 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Anthranilate Phosphoribosyltransferase From Thermococcus Kodakaraensis (pdb code 5nof). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Anthranilate Phosphoribosyltransferase From Thermococcus Kodakaraensis, PDB code: 5nof:

Chlorine binding site 1 out of 1 in 5nof

Go back to Chlorine Binding Sites List in 5nof
Chlorine binding site 1 out of 1 in the Anthranilate Phosphoribosyltransferase From Thermococcus Kodakaraensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Anthranilate Phosphoribosyltransferase From Thermococcus Kodakaraensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:51.4
occ:0.65
 O B:HOH534 2.0 43.6 1.0
CG1 B:VAL62 3.7 75.9 1.0
O B:ALA147 3.7 51.1 1.0
O B:HOH533 4.0 44.5 1.0
CG2 B:VAL62 4.0 78.5 1.0
CB B:VAL62 4.2 76.0 1.0
CZ B:TYR148 4.3 42.5 1.0
C B:ALA147 4.4 49.5 1.0
CE1 B:TYR148 4.4 41.4 1.0
CD B:PRO128 4.5 53.3 1.0
CE2 B:TYR148 4.5 43.6 1.0
CD1 B:TYR148 4.5 39.5 1.0
CD2 B:TYR148 4.6 38.0 1.0
CG B:TYR148 4.7 40.5 1.0
CG B:PRO128 4.8 55.2 1.0
CB B:ALA147 4.8 53.8 1.0
OH B:TYR148 4.8 44.1 1.0
NA B:NA404 4.8 77.0 1.0
CA B:TYR148 4.9 49.8 1.0
N B:TYR148 5.0 57.3 1.0

Reference:

S.Perveen, N.Rashid, X.F.Tang, T.Imanaka, A.C.Papageorgiou. Anthranilate Phosphoribosyltransferase From the Hyperthermophilic Archaeon Thermococcus Kodakarensis Shows Maximum Activity with Zinc and Forms A Unique Dimeric Structure. Febs Open Bio V. 7 1217 2017.
ISSN: ESSN 2211-5463
PubMed: 28781961
DOI: 10.1002/2211-5463.12264
Page generated: Sat Jul 12 06:17:00 2025

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