Chlorine in PDB 5o0l: Deglycosylated Nogo Receptor with Native Disulfide Structure 2

The structure of Deglycosylated Nogo Receptor with Native Disulfide Structure 2, PDB code: 5o0l was solved by M.F.Pronker, B.J.C.Janssen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.40 / 2.51
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	72.909, 38.597, 119.610, 90.00, 106.20, 90.00
R / Rfree (%)	19.7 / 25.6

The binding sites of Chlorine atom in the Deglycosylated Nogo Receptor with Native Disulfide Structure 2 (pdb code 5o0l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Deglycosylated Nogo Receptor with Native Disulfide Structure 2, PDB code: 5o0l:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Deglycosylated Nogo Receptor with Native Disulfide Structure 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Deglycosylated Nogo Receptor with Native Disulfide Structure 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl404 b:81.4 occ:1.00 NH2 A:ARG143 3.1 76.5 1.0 CE1 A:HIS119 4.2 37.3 1.0 CZ A:ARG143 4.2 67.2 1.0 NE A:ARG143 4.4 59.5 1.0 NE2 A:HIS119 4.4 44.7 1.0 ND1 A:HIS119 5.0 40.2 1.0

Chlorine binding site 2 out of 3 in the Deglycosylated Nogo Receptor with Native Disulfide Structure 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Deglycosylated Nogo Receptor with Native Disulfide Structure 2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl404 b:78.1 occ:1.00 OE1 B:GLN211 3.3 69.0 1.0 NZ A:LYS299 4.0 61.5 1.0 CL B:CL405 4.0 75.8 1.0 CD B:GLN211 4.1 56.0 1.0 CA B:GLY187 4.1 44.6 1.0 OD1 B:ASP163 4.2 58.6 1.0 NH2 A:ARG300 4.2 88.9 1.0 NH1 A:ARG300 4.3 86.2 1.0 CG A:GLU284 4.6 73.3 1.0 O A:SER282 4.6 45.8 1.0 CB B:GLN211 4.7 41.5 1.0 CE A:LYS299 4.8 62.7 1.0 NE2 B:GLN211 4.8 47.6 1.0 CZ A:ARG300 4.8 85.7 1.0 N A:GLU284 4.9 53.0 1.0 O B:GLY187 4.9 60.8 1.0 CG B:GLN211 4.9 50.7 1.0 C B:GLY187 5.0 48.8 1.0 C A:SER283 5.0 48.1 1.0

Chlorine binding site 3 out of 3 in the Deglycosylated Nogo Receptor with Native Disulfide Structure 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Deglycosylated Nogo Receptor with Native Disulfide Structure 2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl405 b:75.8 occ:1.00 NZ A:LYS299 3.2 61.5 1.0 OD1 B:ASP163 3.3 58.6 1.0 OD2 B:ASP163 3.5 54.1 1.0 CG B:ASP163 3.7 50.4 1.0 NE2 B:HIS186 3.8 52.9 1.0 CL B:CL404 4.0 78.1 1.0 CE A:LYS299 4.2 62.7 1.0 OE1 B:GLN211 4.2 69.0 1.0 NH1 A:ARG300 4.2 86.2 1.0 CD2 B:HIS186 4.3 50.1 1.0 O A:SER282 4.7 45.8 1.0 CE1 B:HIS186 4.9 48.5 1.0

M.F.Pronker, R.P.Tas, H.C.Vlieg, B.J.C.Janssen. Nogo Receptor Crystal Structures with A Native Disulfide Pattern Suggest A Novel Mode of Self-Interaction. Acta Crystallogr D Struct V. 73 860 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 29095159
DOI: 10.1107/S2059798317013791