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Chlorine in PDB 5o0r: Deglycosylated Nogo Receptor with Native Disulfide Structure

Protein crystallography data

The structure of Deglycosylated Nogo Receptor with Native Disulfide Structure, PDB code: 5o0r was solved by M.F.Pronker, B.J.C.Janssen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.11 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.728, 111.654, 114.835, 90.00, 90.00, 90.00
R / Rfree (%) 25.2 / 30.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Deglycosylated Nogo Receptor with Native Disulfide Structure (pdb code 5o0r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Deglycosylated Nogo Receptor with Native Disulfide Structure, PDB code: 5o0r:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5o0r

Go back to Chlorine Binding Sites List in 5o0r
Chlorine binding site 1 out of 3 in the Deglycosylated Nogo Receptor with Native Disulfide Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Deglycosylated Nogo Receptor with Native Disulfide Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:67.1
occ:1.00
NE2 A:HIS213 4.1 48.2 1.0
CE1 A:HIS213 4.3 48.5 1.0
CD A:ARG189 4.6 61.9 1.0

Chlorine binding site 2 out of 3 in 5o0r

Go back to Chlorine Binding Sites List in 5o0r
Chlorine binding site 2 out of 3 in the Deglycosylated Nogo Receptor with Native Disulfide Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Deglycosylated Nogo Receptor with Native Disulfide Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:77.2
occ:1.00
CD1 B:ILE85 3.7 45.8 1.0
NH1 B:ARG61 4.1 57.6 1.0
CZ2 B:TRP87 4.3 35.1 1.0
OE1 B:GLN109 4.5 47.0 1.0
CG2 B:ILE85 4.9 28.1 1.0
CH2 B:TRP87 4.9 36.7 1.0
CE2 B:TRP87 5.0 33.5 1.0

Chlorine binding site 3 out of 3 in 5o0r

Go back to Chlorine Binding Sites List in 5o0r
Chlorine binding site 3 out of 3 in the Deglycosylated Nogo Receptor with Native Disulfide Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Deglycosylated Nogo Receptor with Native Disulfide Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl405

b:61.9
occ:1.00
NH2 A:ARG199 3.6 86.2 1.0
OD2 B:ASP171 3.8 74.5 1.0
CB B:GLU195 3.8 79.6 1.0
N B:GLU195 3.8 65.2 1.0
CE1 A:HIS196 3.9 57.8 1.0
NH1 A:ARG199 4.0 88.2 1.0
ND1 A:HIS196 4.1 56.2 1.0
OD1 B:ASP171 4.2 73.0 1.0
CZ A:ARG199 4.3 84.5 1.0
CG B:ASP171 4.3 71.6 1.0
CD2 B:HIS196 4.4 80.7 1.0
CA B:GLU195 4.5 66.8 1.0
CB B:PRO194 4.5 55.1 1.0
OE1 B:GLU195 4.5 1.0 1.0
N B:HIS196 4.8 63.3 1.0
C B:PRO194 4.9 62.1 1.0
CA B:PRO194 4.9 62.0 1.0

Reference:

M.F.Pronker, R.P.Tas, H.C.Vlieg, B.J.C.Janssen. Nogo Receptor Crystal Structures with A Native Disulfide Pattern Suggest A Novel Mode of Self-Interaction. Acta Crystallogr D Struct V. 73 860 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 29095159
DOI: 10.1107/S2059798317013791
Page generated: Sat Jul 12 06:26:58 2025

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