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Chlorine in PDB 5o2f: Crystal Structure of Ndm-1 in Complex with Hydrolyzed Ampicillin - New Refinement

Enzymatic activity of Crystal Structure of Ndm-1 in Complex with Hydrolyzed Ampicillin - New Refinement

All present enzymatic activity of Crystal Structure of Ndm-1 in Complex with Hydrolyzed Ampicillin - New Refinement:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of Ndm-1 in Complex with Hydrolyzed Ampicillin - New Refinement, PDB code: 5o2f was solved by J.E.Raczynska, I.G.Shabalin, M.Jaskolski, W.Minor, A.Wlodawer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.79 / 2.01
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 38.620, 77.570, 132.310, 90.00, 90.00, 90.00
R / Rfree (%) 13.2 / 18.2

Other elements in 5o2f:

The structure of Crystal Structure of Ndm-1 in Complex with Hydrolyzed Ampicillin - New Refinement also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Ndm-1 in Complex with Hydrolyzed Ampicillin - New Refinement (pdb code 5o2f). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Ndm-1 in Complex with Hydrolyzed Ampicillin - New Refinement, PDB code: 5o2f:

Chlorine binding site 1 out of 1 in 5o2f

Go back to Chlorine Binding Sites List in 5o2f
Chlorine binding site 1 out of 1 in the Crystal Structure of Ndm-1 in Complex with Hydrolyzed Ampicillin - New Refinement


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Ndm-1 in Complex with Hydrolyzed Ampicillin - New Refinement within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl307

b:59.0
occ:1.00
N A:GLY29 3.6 37.5 1.0
O A:HOH557 3.8 46.2 1.0
CA A:MET28 4.0 48.8 1.0
NH1 A:ARG32 4.1 41.9 1.0
C A:MET28 4.2 42.4 1.0
NH2 A:ARG32 4.3 46.6 1.0
CA A:GLY29 4.5 38.8 1.0
N A:GLU30 4.5 33.2 1.0
CZ A:ARG32 4.7 40.4 1.0
CB A:MET28 4.8 52.0 1.0
O A:HOH560 4.8 47.3 1.0
N A:MET28 5.0 51.8 1.0

Reference:

J.E.Raczynska, I.G.Shabalin, W.Minor, A.Wlodawer, M.Jaskolski. A Close Look Onto Structural Models and Primary Ligands of Metallo-Beta-Lactamases. Drug Resist. Updat. V. 40 1 2018.
ISSN: ESSN 1532-2084
PubMed: 30466711
DOI: 10.1016/J.DRUP.2018.08.001
Page generated: Sat Jul 12 06:28:38 2025

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