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Chlorine in PDB 5o8n: Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.

Enzymatic activity of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.

All present enzymatic activity of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.:
3.4.24.27;

Protein crystallography data

The structure of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation., PDB code: 5o8n was solved by D.N.Axford, C.Burton, P.Docker, M.Prince, P.D.Topham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.00 / 1.90
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.552, 93.552, 129.753, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 25.9

Other elements in 5o8n:

The structure of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation. also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Calcium (Ca) 4 atoms
Sodium (Na) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation. (pdb code 5o8n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation., PDB code: 5o8n:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5o8n

Go back to Chlorine Binding Sites List in 5o8n
Chlorine binding site 1 out of 3 in the Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:54.3
occ:1.00
 ZN A:ZN403 2.3 37.4 1.0
O A:HOH602 2.4 30.0 1.0
CL A:CL406 3.4 77.1 1.0
OE1 A:GLU166 3.4 39.1 1.0
NE2 A:HIS231 3.4 45.8 1.0
NE2 A:HIS146 3.6 39.2 1.0
CE1 A:HIS142 3.6 34.5 1.0
OH A:TYR157 3.6 54.2 1.0
O A:HOH581 3.7 46.6 1.0
O A:HOH587 3.9 30.0 1.0
OE2 A:GLU143 4.0 41.5 1.0
OE1 A:GLU143 4.0 41.9 1.0
CE1 A:HIS231 4.1 47.3 1.0
CD A:GLU166 4.2 38.0 1.0
CD2 A:HIS146 4.2 36.9 1.0
OE2 A:GLU166 4.3 43.7 1.0
CD A:GLU143 4.4 40.8 1.0
ND1 A:HIS142 4.4 42.2 1.0
CE1 A:HIS146 4.5 40.4 1.0
NE2 A:HIS142 4.6 38.8 1.0
CD2 A:HIS231 4.6 36.6 1.0
O A:ALA113 4.6 34.9 1.0
CZ A:TYR157 4.8 57.0 1.0

Chlorine binding site 2 out of 3 in 5o8n

Go back to Chlorine Binding Sites List in 5o8n
Chlorine binding site 2 out of 3 in the Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:61.2
occ:1.00
 CD1 A:TYR66 3.9 42.4 1.0
CG A:TYR66 4.0 47.3 1.0
CE1 A:TYR66 4.1 45.3 1.0
CD2 A:TYR66 4.2 43.2 1.0
CZ A:TYR66 4.3 50.8 1.0
CE2 A:TYR66 4.3 38.8 1.0
CB A:TYR66 4.6 38.5 1.0

Chlorine binding site 3 out of 3 in 5o8n

Go back to Chlorine Binding Sites List in 5o8n
Chlorine binding site 3 out of 3 in the Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:77.1
occ:1.00
 O A:HOH602 2.6 30.0 1.0
CL A:CL404 3.4 54.3 1.0
OH A:TYR157 3.8 54.2 1.0
CZ A:TYR157 4.1 57.0 1.0
CB A:PHE114 4.1 30.1 1.0
O A:TRP115 4.4 36.4 1.0
CE2 A:TYR157 4.5 52.9 1.0
NE2 A:HIS146 4.5 39.2 1.0
CE1 A:TYR157 4.6 56.2 1.0
N A:TRP115 4.6 39.5 1.0
CD2 A:HIS146 4.6 36.9 1.0
CA A:PHE114 4.7 35.0 1.0
ZN A:ZN403 4.7 37.4 1.0
OE1 A:GLU143 4.9 41.9 1.0

Reference:

C.G.Burton, D.Axford, A.M.J.Edwards, R.J.Gildea, R.H.Morris, M.I.Newton, A.M.Orville, M.Prince, P.D.Topham, P.T.Docker. An Acoustic on-Chip Goniometer For Room Temperature Macromolecular Crystallography. Lab Chip V. 17 4225 2017.
ISSN: ISSN 1473-0189
PubMed: 29124258
DOI: 10.1039/C7LC00812K
Page generated: Sat Jul 12 06:38:10 2025

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