Atomistry » Chlorine » PDB 5o5u-5of0 » 5odg
Atomistry »
  Chlorine »
    PDB 5o5u-5of0 »
      5odg »

Chlorine in PDB 5odg: Crystal Structure of SMAD3-MH1 Bound to the Ggct Site.

Protein crystallography data

The structure of Crystal Structure of SMAD3-MH1 Bound to the Ggct Site., PDB code: 5odg was solved by Z.Kaczmarska, J.A.Marquez, M.J.Macias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.83 / 2.12
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 104.990, 104.990, 72.490, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 24.2

Other elements in 5odg:

The structure of Crystal Structure of SMAD3-MH1 Bound to the Ggct Site. also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of SMAD3-MH1 Bound to the Ggct Site. (pdb code 5odg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of SMAD3-MH1 Bound to the Ggct Site., PDB code: 5odg:

Chlorine binding site 1 out of 1 in 5odg

Go back to Chlorine Binding Sites List in 5odg
Chlorine binding site 1 out of 1 in the Crystal Structure of SMAD3-MH1 Bound to the Ggct Site.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of SMAD3-MH1 Bound to the Ggct Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:1.0
occ:1.00
O A:HOH336 2.9 72.8 1.0
O A:HOH322 2.9 81.5 1.0
O A:CYS64 3.3 55.9 1.0
O A:HOH337 3.6 78.8 1.0
O A:HOH321 3.9 54.0 1.0
OE1 A:GLN47 4.2 58.6 1.0
C A:CYS64 4.3 53.3 1.0
CB A:LYS63 4.5 58.3 1.0
N A:CYS64 4.5 51.0 1.0
CB A:CYS64 4.6 51.9 1.0
CA A:CYS64 4.7 50.2 1.0
CD A:GLN47 4.8 66.7 1.0
CD A:LYS63 5.0 70.2 1.0

Reference:

P.Martin-Malpartida, M.Batet, Z.Kaczmarska, R.Freier, T.Gomes, E.Aragon, Y.Zou, Q.Wang, Q.Xi, L.Ruiz, A.Vea, J.A.Marquez, J.Massague, M.J.Macias. Structural Basis For Genome Wide Recognition of 5-Bp Gc Motifs By Smad Transcription Factors. Nat Commun V. 8 2070 2017.
ISSN: ESSN 2041-1723
PubMed: 29234012
DOI: 10.1038/S41467-017-02054-6
Page generated: Sat Jul 12 06:42:16 2025

Last articles

Mg in 1KUV
Mg in 1KSZ
Mg in 1KSJ
Mg in 1KSH
Mg in 1KSG
Mg in 1KQP
Mg in 1KSF
Mg in 1KQM
Mg in 1KOF
Mg in 1KO5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy