Atomistry » Chlorine » PDB 5ouo-5p9p » 5oxt
Atomistry »
  Chlorine »
    PDB 5ouo-5p9p »
      5oxt »

Chlorine in PDB 5oxt: Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate

Enzymatic activity of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate

All present enzymatic activity of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate:
1.11.2.1;

Protein crystallography data

The structure of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate, PDB code: 5oxt was solved by M.Ramirez-Escudero, J.Sanz-Aparicio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.23 / 1.42
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 64.999, 99.151, 83.890, 90.00, 103.27, 90.00
R / Rfree (%) 15 / 16.4

Other elements in 5oxt:

The structure of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms
Iron (Fe) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate (pdb code 5oxt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate, PDB code: 5oxt:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5oxt

Go back to Chlorine Binding Sites List in 5oxt
Chlorine binding site 1 out of 3 in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1002

b:19.1
occ:0.80
 O A:HOH1356 2.8 11.0 1.0
N A:ASN71 2.9 8.1 1.0
CB A:ASN71 3.4 8.2 1.0
CB A:PRO238 3.5 8.7 1.0
CA A:ASP70 3.7 8.6 1.0
CA A:ASN71 3.7 8.1 1.0
C A:ASP70 3.8 8.3 1.0
CG A:PRO238 3.9 8.8 1.0
CB A:ASP70 3.9 9.6 1.0
O A:HOH1342 3.9 15.3 1.0
CB A:PRO8 4.0 11.2 1.0
O A:HOH1301 4.3 9.5 1.0
O A:HOH1279 4.4 13.5 1.0
CA A:PRO8 4.5 10.9 1.0
CG A:PRO8 4.5 11.5 1.0
CG A:ASN71 4.8 8.3 1.0
O A:PHE69 4.9 7.5 1.0
OE1 A:GLN64 4.9 10.6 1.0
C A:ASN71 5.0 8.0 1.0
N A:ASP70 5.0 8.1 1.0
O A:ASP70 5.0 7.9 1.0
CA A:PRO238 5.0 8.7 1.0

Chlorine binding site 2 out of 3 in 5oxt

Go back to Chlorine Binding Sites List in 5oxt
Chlorine binding site 2 out of 3 in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:19.8
occ:0.80
 O B:HOH738 2.8 10.9 1.0
N B:ASN71 2.9 8.0 1.0
CB B:ASN71 3.4 8.3 1.0
CB B:PRO238 3.5 8.9 1.0
CA B:ASP70 3.6 8.6 1.0
CA B:ASN71 3.7 8.2 1.0
C B:ASP70 3.8 8.3 1.0
CG B:PRO238 3.9 9.0 1.0
CB B:ASP70 3.9 9.8 1.0
O B:HOH717 3.9 17.4 1.0
CB B:PRO8 4.0 11.3 1.0
O B:HOH659 4.3 9.6 1.0
O B:HOH694 4.4 14.0 1.0
CA B:PRO8 4.4 11.0 1.0
CG B:PRO8 4.5 11.5 1.0
CG B:ASN71 4.8 8.6 1.0
O B:PHE69 4.8 7.8 1.0
OE1 B:GLN64 4.9 10.8 1.0
O B:HOH916 4.9 40.5 1.0
N B:ASP70 5.0 8.2 1.0
C B:ASN71 5.0 8.1 1.0
O B:ASP70 5.0 7.8 1.0
CA B:PRO238 5.0 8.9 1.0

Chlorine binding site 3 out of 3 in 5oxt

Go back to Chlorine Binding Sites List in 5oxt
Chlorine binding site 3 out of 3 in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1002

b:20.6
occ:0.80
 O C:HOH1335 2.8 12.6 1.0
N C:ASN71 3.0 9.0 1.0
CB C:ASN71 3.4 9.2 1.0
CB C:PRO238 3.5 9.7 1.0
CA C:ASP70 3.7 9.5 1.0
CA C:ASN71 3.8 9.1 1.0
CG C:PRO238 3.8 9.8 1.0
C C:ASP70 3.8 9.0 1.0
CB C:PRO8 3.9 11.3 1.0
O C:HOH1368 3.9 19.6 1.0
CB C:ASP70 3.9 10.4 1.0
O C:HOH1237 4.3 10.2 1.0
CA C:PRO8 4.4 11.1 1.0
O C:HOH1280 4.4 16.5 1.0
CG C:PRO8 4.4 11.5 1.0
CG C:ASN71 4.8 9.3 1.0
OE1 C:GLN64 4.8 10.8 1.0
O C:PHE69 4.8 9.0 1.0
CA C:PRO238 5.0 9.9 1.0
N C:ASP70 5.0 9.0 1.0
C C:ASN71 5.0 9.0 1.0

Reference:

M.Ramirez-Escudero, J.Sanz-Aparicio. Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate To Be Published.
Page generated: Sat Jul 12 07:05:50 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy