Chlorine in PDB 5oyd: GH5 Endo-Xyloglucanase From Cellvibrio Japonicus

All present enzymatic activity of GH5 Endo-Xyloglucanase From Cellvibrio Japonicus:
3.2.1.151;

The structure of GH5 Endo-Xyloglucanase From Cellvibrio Japonicus, PDB code: 5oyd was solved by M.Attia, C.E.Nelson, W.A.Offen, N.Jain, J.G.Gardner, G.J.Davies, H.Brumer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	83.05 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	55.455, 97.598, 157.196, 90.00, 90.00, 90.00
R / Rfree (%)	21.8 / 28.3

The binding sites of Chlorine atom in the GH5 Endo-Xyloglucanase From Cellvibrio Japonicus (pdb code 5oyd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the GH5 Endo-Xyloglucanase From Cellvibrio Japonicus, PDB code: 5oyd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the GH5 Endo-Xyloglucanase From Cellvibrio Japonicus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of GH5 Endo-Xyloglucanase From Cellvibrio Japonicus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl510 b:54.3 occ:0.50 NZ A:LYS123 2.4 57.2 0.5 O A:HOH696 2.9 74.3 1.0 CE A:LYS123 3.5 57.2 0.5 O A:HOH613 3.5 67.3 1.0 OH A:TYR202 3.9 57.8 1.0 CD A:LYS123 4.1 61.3 1.0 CG A:LYS123 4.9 58.3 1.0 OE2 A:GLU246 5.0 51.9 1.0

Chlorine binding site 2 out of 2 in the GH5 Endo-Xyloglucanase From Cellvibrio Japonicus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of GH5 Endo-Xyloglucanase From Cellvibrio Japonicus within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl510 b:76.9 occ:1.00 N B:MET309 3.3 47.2 1.0 CA B:HIS308 3.6 50.4 1.0 CB B:HIS308 3.8 48.5 1.0 C B:HIS308 4.0 50.0 1.0 CG B:MET309 4.1 56.9 1.0 CB B:MET309 4.2 51.7 1.0 CA B:MET309 4.3 44.0 1.0 O B:MET309 4.9 51.0 1.0 O B:THR307 4.9 46.7 1.0 N B:HIS308 5.0 45.7 1.0

M.A.Attia, C.E.Nelson, W.A.Offen, N.Jain, G.J.Davies, J.G.Gardner, H.Brumer. In Vitro and in Vivo Characterization of Threecellvibrio Japonicusglycoside Hydrolase Family 5 Members Reveals Potent Xyloglucan Backbone-Cleaving Functions. Biotechnol Biofuels V. 11 45 2018.
ISSN: ESSN 1754-6834
PubMed: 29467823
DOI: 10.1186/S13068-018-1039-6