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Chlorine in PDB 5qgy: Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT7 in Complex with NUOOA000158

Protein crystallography data

The structure of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT7 in Complex with NUOOA000158, PDB code: 5qgy was solved by T.Krojer, R.Talon, M.Fairhead, L.Diaz Saez, A.R.Bradley, A.Aimon, P.Collins, J.Brandao-Neto, A.Douangamath, G.F.Ruda, T.Szommer, V.Srikannathasan, J.Elkins, J.Spencer, N.London, A.Nelson, P.E.Brennan, K.Huber, C.Bountra, C.H.Arrowsmith, A.Edwards, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 107.81 / 1.72
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 124.224, 124.224, 40.901, 90.00, 90.00, 120.00
R / Rfree (%) 19.4 / 21

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT7 in Complex with NUOOA000158 (pdb code 5qgy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT7 in Complex with NUOOA000158, PDB code: 5qgy:

Chlorine binding site 1 out of 1 in 5qgy

Go back to Chlorine Binding Sites List in 5qgy
Chlorine binding site 1 out of 1 in the Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT7 in Complex with NUOOA000158


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT7 in Complex with NUOOA000158 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:33.0
occ:0.44
CL1 A:H1Y305 0.0 33.0 0.4
C7 A:H1Y305 1.7 29.8 0.4
C8 A:H1Y305 2.7 28.8 0.4
C6 A:H1Y305 2.7 28.4 0.4
CB A:GLU141 3.7 38.1 1.0
CG A:GLU141 3.7 42.7 1.0
OE2 A:GLU97 3.7 33.7 1.0
CD1 A:LEU65 3.9 67.6 1.0
C3 A:H1Y305 4.0 29.7 0.4
C5 A:H1Y305 4.0 29.6 0.4
CD A:GLU141 4.0 44.2 1.0
NH1 A:ARG61 4.1 49.4 1.0
CD A:GLU97 4.3 33.5 1.0
CG A:GLU97 4.3 28.5 1.0
OE2 A:GLU141 4.4 47.0 1.0
O A:GLU141 4.4 32.4 1.0
CA A:GLU141 4.4 35.0 1.0
OE1 A:GLU141 4.5 52.0 1.0
C4 A:H1Y305 4.5 27.7 0.4
C A:GLU141 4.7 33.4 1.0
CZ A:ARG61 4.8 49.2 1.0
O1 A:H1Y305 4.9 35.6 0.4
CD2 A:LEU65 4.9 68.4 1.0
NH2 A:ARG61 5.0 53.0 1.0

Reference:

T.Krojer, R.Talon, M.Fairhead, L.Diaz Saez, A.R.Bradley, A.Aimon, P.Collins, J.Brandao-Neto, A.Douangamath, G.F.Ruda, T.Szommer, V.Srikannathasan, J.Elkins, J.Spencer, N.London, A.Nelson, P.E.Brennan, K.Huber, C.Bountra, C.H.Arrowsmith, A.Edwards, F.Von Delft. Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) To Be Published.
Page generated: Sat Jul 12 07:37:03 2025

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