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Chlorine in PDB 5qkb: Ground-State Model of NUDT5 and Corresponding Apo Datasets For Pandda Analysis

Enzymatic activity of Ground-State Model of NUDT5 and Corresponding Apo Datasets For Pandda Analysis

All present enzymatic activity of Ground-State Model of NUDT5 and Corresponding Apo Datasets For Pandda Analysis:
2.7.7.96; 3.6.1.13; 3.6.1.58;

Protein crystallography data

The structure of Ground-State Model of NUDT5 and Corresponding Apo Datasets For Pandda Analysis, PDB code: 5qkb was solved by Y.Dubianok, P.Collins, T.Krojer, N.Wright, C.Strain-Damerell, N.Burgess-Brown, C.Bountra, C.H.Arrowsmith, A.Edwards, K.Huber, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 78.54 / 1.58
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 49.074, 59.679, 80.321, 79.44, 81.82, 75.93
R / Rfree (%) 21.9 / 25

Other elements in 5qkb:

The structure of Ground-State Model of NUDT5 and Corresponding Apo Datasets For Pandda Analysis also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ground-State Model of NUDT5 and Corresponding Apo Datasets For Pandda Analysis (pdb code 5qkb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Ground-State Model of NUDT5 and Corresponding Apo Datasets For Pandda Analysis, PDB code: 5qkb:

Chlorine binding site 1 out of 1 in 5qkb

Go back to Chlorine Binding Sites List in 5qkb
Chlorine binding site 1 out of 1 in the Ground-State Model of NUDT5 and Corresponding Apo Datasets For Pandda Analysis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ground-State Model of NUDT5 and Corresponding Apo Datasets For Pandda Analysis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:68.1
occ:1.00
CG2 B:THR145 4.0 23.2 1.0
CG2 B:VAL67 4.2 28.0 1.0
ND1 A:HIS206 4.3 27.7 1.0
CG A:HIS206 4.4 23.6 1.0
CE1 A:HIS206 4.4 23.0 1.0
CG2 B:THR147 4.4 32.9 1.0
CD2 A:HIS206 4.6 20.2 1.0
NE2 A:HIS206 4.6 26.3 1.0
CG1 B:VAL67 4.8 28.7 1.0
CB B:VAL67 4.8 27.9 1.0
CB A:HIS206 4.9 21.8 1.0

Reference:

Y.Dubianok, P.Collins, T.Krojer, N.Wright, C.Strain-Damerell, N.Burgess-Brown, C.Bountra, C.H.Arrowsmith, A.Edwards, K.Huber, F.Von Delft. Pandda Analysis Group Deposition of Ground-State Model To Be Published.
Page generated: Sat Jul 12 07:44:41 2025

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