Chlorine in PDB 5sdl: Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z321318226

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z321318226, PDB code: 5sdl was solved by C.T.Tham, J.A.Coker, T.Krojer, W.R.Foster, L.Koekemoer, A.Douangamath, R.Talon, D.Fearon, F.Von Delft, W.W.Yue, C.Bountra, G.A.Bezerra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	59.82 / 2.44
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	101.92, 117.47, 147.78, 90, 90, 90
R / Rfree (%)	20.9 / 23.9

The binding sites of Chlorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z321318226 (pdb code 5sdl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z321318226, PDB code: 5sdl:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z321318226


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z321318226 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl802 b:87.7 occ:1.00 N A:ASP687 3.3 53.8 1.0 C A:LEU685 3.6 55.5 1.0 N A:ALA686 3.7 54.8 1.0 CB A:ASP687 3.7 56.5 1.0 CA A:LEU685 3.8 56.0 1.0 CD2 A:TYR688 3.9 54.6 1.0 CB A:LEU685 3.9 57.2 1.0 CA A:ASP687 3.9 53.7 1.0 OD2 A:ASP687 4.1 67.1 1.0 O A:LEU685 4.2 55.8 1.0 CG A:ASP687 4.2 64.3 1.0 C A:ALA686 4.3 54.5 1.0 CE2 A:TYR688 4.3 55.6 1.0 CD2 A:LEU685 4.3 60.3 1.0 CA A:ALA686 4.4 54.7 1.0 N A:TYR688 4.4 52.4 1.0 C A:ASP687 4.5 53.0 1.0 CD A:ARG348 4.5 68.7 1.0 NE A:ARG348 4.6 73.4 1.0 CB A:ALA686 4.7 54.7 1.0 CG A:LEU685 4.8 59.8 1.0 CG A:TYR688 5.0 53.4 1.0

Chlorine binding site 2 out of 2 in the Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z321318226


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z321318226 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl802 b:88.7 occ:1.00 N B:LYS254 3.8 70.6 1.0 CG B:LYS254 3.9 77.9 1.0 CE2 B:PHE124 4.0 59.1 1.0 CA B:PRO253 4.1 71.7 1.0 CZ B:PHE124 4.2 59.5 1.0 CB B:PRO253 4.2 72.5 1.0 CD2 B:PHE124 4.2 58.1 1.0 O B:ASP60 4.5 58.9 1.0 CE1 B:PHE124 4.5 59.7 1.0 C B:PRO253 4.5 71.1 1.0 CG B:PHE124 4.6 57.7 1.0 CD2 B:LEU251 4.7 71.1 1.0 CD1 B:PHE124 4.7 58.7 1.0 CB B:LYS254 4.7 72.9 1.0 CD B:LYS254 4.9 83.2 1.0 CA B:LYS254 4.9 70.5 1.0 CE B:LYS254 5.0 87.9 1.0

C.T.Tham, J.A.Coker, T.Krojer, W.R.Foster, L.Koekemoer, A.Douangamath, R.Talon, D.Fearon, F.Von Delft, W.W.Yue, C.Bountra, G.A.Bezerra. Pandda Analysis Group Deposition To Be Published.