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Chlorine in PDB 5sqh: Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5010894431- (S,S) Isomer

Enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5010894431- (S,S) Isomer

All present enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5010894431- (S,S) Isomer:
3.4.19.121;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5010894431- (S,S) Isomer, PDB code: 5sqh was solved by G.J.Correy, J.S.Fraser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.69 / 1.05
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 88.742, 88.742, 39.468, 90, 90, 90
R / Rfree (%) 13.3 / 15.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5010894431- (S,S) Isomer (pdb code 5sqh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5010894431- (S,S) Isomer, PDB code: 5sqh:

Chlorine binding site 1 out of 1 in 5sqh

Go back to Chlorine Binding Sites List in 5sqh
Chlorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5010894431- (S,S) Isomer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5010894431- (S,S) Isomer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:10.8
occ:0.26
 CL17 A:QR6201 0.0 10.8 0.3
O A:HOH462 1.0 13.8 0.7
C16 A:QR6201 1.8 10.5 0.3
C18 A:QR6201 2.7 9.9 0.3
C15 A:QR6201 2.8 10.9 0.3
O A:HOH567 2.8 30.5 0.7
HA2 A:GLY48 2.8 12.2 0.3
H181 A:QR6201 2.8 11.9 0.3
HA2 A:GLY48 2.9 13.8 0.7
O29 A:QR6201 2.9 11.7 0.3
C14 A:QR6201 3.1 11.9 0.3
O A:GLY48 3.1 11.1 0.7
C A:GLY48 3.3 10.6 0.7
CA A:GLY48 3.4 10.1 0.3
CA A:GLY48 3.4 11.5 0.7
O A:GLY48 3.5 9.7 0.3
C A:GLY48 3.5 9.4 0.3
H A:GLY48 3.5 12.9 0.3
O A:HOH590 3.6 42.3 0.7
HB2 A:ALA52 3.7 13.9 1.0
H A:GLY48 3.7 13.9 0.7
N A:GLY48 3.8 10.7 0.3
N A:GLY48 3.9 11.5 0.7
C19 A:QR6201 4.0 10.0 0.3
C28 A:QR6201 4.0 10.3 0.3
N A:VAL49 4.1 9.8 0.7
O A:HOH584 4.1 24.5 0.7
HA3 A:GLY48 4.3 12.2 0.3
N A:VAL49 4.3 9.3 0.3
HA3 A:GLY48 4.3 13.8 0.7
HA A:VAL49 4.3 11.7 0.7
N13 A:QR6201 4.4 13.7 0.3
C27 A:QR6201 4.5 10.5 0.3
CB A:ALA52 4.6 11.5 1.0
H A:VAL49 4.6 11.8 0.7
HB3 A:ALA52 4.6 13.9 1.0
HA A:VAL49 4.7 11.4 0.3
H A:VAL49 4.7 11.2 0.3
O A:HOH346 4.8 13.7 0.3
H A:ALA52 4.8 11.2 1.0
CA A:VAL49 4.8 9.8 0.7
O26 A:QR6201 4.9 9.6 0.3
H121 A:QR6201 4.9 17.2 0.3
O A:HOH565 4.9 27.9 0.7
H281 A:QR6201 4.9 12.3 0.3
H131 A:QR6201 5.0 16.5 0.3
HB1 A:ALA52 5.0 13.9 1.0
C A:GLY47 5.0 10.8 0.7

Reference:

S.Gahbauer, G.J.Correy, M.Schuller, M.P.Ferla, Y.U.Doruk, M.Rachman, T.Wu, M.Diolaiti, S.Wang, R.J.Neitz, D.Fearon, D.Radchenko, Y.Moroz, J.J.Irwin, A.R.Renslo, J.C.Taylor, J.E.Gestwicki, F.Von Delft, A.Ashworth, I.Ahel, B.K.Shoichet, J.S.Fraser. Structure-Based Inhibitor Optimization For the NSP3 Macrodomain of Sars-Cov-2. Biorxiv 2022.
ISSN: ISSN 2692-8205
PubMed: 35794891
DOI: 10.1101/2022.06.27.497816
Page generated: Sat Jul 12 08:37:19 2025

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