Chlorine in PDB 5t4n: Crystal Structure of Human Protocadherin-15 EC3-5 D414A Variant

The structure of Crystal Structure of Human Protocadherin-15 EC3-5 D414A Variant, PDB code: 5t4n was solved by R.E.Powers, R.Gaudet, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.38 / 2.70
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	105.655, 105.655, 193.767, 90.00, 90.00, 120.00
R / Rfree (%)	20.2 / 23.9

The structure of Crystal Structure of Human Protocadherin-15 EC3-5 D414A Variant also contains other interesting chemical elements:

Calcium

(Ca)

10 atoms

The binding sites of Chlorine atom in the Crystal Structure of Human Protocadherin-15 EC3-5 D414A Variant (pdb code 5t4n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human Protocadherin-15 EC3-5 D414A Variant, PDB code: 5t4n:

Chlorine binding site 1 out of 1 in the Crystal Structure of Human Protocadherin-15 EC3-5 D414A Variant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Protocadherin-15 EC3-5 D414A Variant within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl706 b:74.6 occ:1.00 CA B:CA705 2.9 79.0 1.0 O B:HOH845 3.4 90.8 1.0 OD1 B:ASP411 3.6 73.2 1.0 OD1 B:ASP366 3.7 84.6 1.0 O B:HOH863 3.9 68.5 1.0 O B:LYS410 4.0 82.2 1.0 OD2 B:ASP366 4.1 97.4 1.0 CG B:GLN370 4.2 78.1 1.0 CG B:ASP366 4.2 86.7 1.0 CA B:ASP411 4.2 75.2 1.0 OD1 B:ASN369 4.3 79.8 1.0 O B:HOH802 4.4 88.8 1.0 C B:LYS410 4.5 82.8 1.0 N B:ASP411 4.7 80.9 1.0 CG B:ASP411 4.7 72.6 1.0 CD B:GLN370 4.9 87.2 1.0 OE1 B:GLN370 4.9 94.5 1.0 CB B:ASP411 5.0 75.0 1.0

R.E.Powers, R.Gaudet, M.Sotomayor. A Partial Calcium-Free Linker Confers Flexibility to Inner-Ear Protocadherin-15. Structure V. 25 482 2017.
ISSN: ISSN 1878-4186
PubMed: 28238533
DOI: 10.1016/J.STR.2017.01.014