Chlorine in PDB 5t9p: Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate

The structure of Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate, PDB code: 5t9p was solved by J.Zhang, E.L.Gonzalez, M.T.T.Hall, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.00 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	37.242, 157.399, 47.130, 90.00, 107.06, 90.00
R / Rfree (%)	19.2 / 23.6

The binding sites of Chlorine atom in the Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate (pdb code 5t9p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate, PDB code: 5t9p:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in the Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl206 b:59.7 occ:1.00 O C:HOH309 2.9 51.3 1.0 O B:HOH342 3.2 42.5 1.0 NH1 B:ARG97 3.5 27.4 1.0 O B:HOH367 3.6 29.9 1.0 CD B:ARG97 4.0 27.2 1.0 NZ C:LYS169 4.0 39.0 1.0 CE B:LYS181 4.3 43.6 1.0 NZ B:LYS181 4.4 38.8 1.0 CE C:LYS169 4.4 36.1 1.0 O B:HOH346 4.4 47.0 1.0 CZ B:ARG97 4.6 29.5 1.0 OG B:SER96 4.6 19.2 0.5 NE B:ARG97 4.7 22.4 1.0

Chlorine binding site 2 out of 7 in the Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl207 b:49.0 occ:1.00 O C:HOH329 2.7 29.0 1.0 O B:HOH362 2.8 35.9 1.0 CG B:GLN163 3.7 21.0 1.0 NH2 B:ARG165 3.9 18.7 1.0 O B:HOH351 4.1 36.4 1.0 CA C:GLY170 4.2 21.9 1.0 O B:HOH342 4.2 42.5 1.0 CD B:GLN163 4.2 20.7 1.0 OE1 B:GLN163 4.2 22.8 1.0 CB B:GLN163 4.4 17.2 1.0 NZ C:LYS172 4.5 47.7 1.0 O C:GLY170 4.5 25.6 1.0 O B:LYS191 4.6 36.6 1.0 O B:THR190 4.7 33.4 1.0 C C:GLY170 4.9 25.1 1.0 CZ B:ARG165 5.0 23.6 1.0

Chlorine binding site 3 out of 7 in the Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl208 b:64.2 occ:1.00 O B:HOH322 3.2 25.9 1.0 O B:HOH380 3.2 46.5 1.0 O B:HOH346 3.6 47.0 1.0 NE2 B:HIS160 3.9 29.9 1.0 NH2 B:ARG97 4.0 25.1 1.0 NH1 B:ARG97 4.1 27.4 1.0 O B:HOH384 4.3 45.0 1.0 CZ B:ARG97 4.4 29.5 1.0 ND1 B:HIS133 4.6 29.9 1.0 CG B:HIS133 4.7 21.2 1.0 CD2 B:HIS160 4.7 24.1 1.0 CE1 B:HIS133 4.8 29.4 1.0 CE1 B:HIS160 4.9 30.9 1.0 O B:LEU98 5.0 19.0 1.0 CD2 B:HIS133 5.0 25.0 1.0

Chlorine binding site 4 out of 7 in the Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl209 b:38.6 occ:1.00 O C:GLU88 2.8 26.0 1.0 NH2 B:ARG97 2.9 25.1 1.0 O B:GLY159 2.9 21.9 1.0 O C:HOH308 2.9 19.5 1.0 CB C:GLU88 3.4 39.9 1.0 CD2 B:HIS160 3.7 24.1 1.0 C C:GLU88 3.7 29.7 1.0 CB C:PRO168 3.7 20.4 1.0 CA B:HIS160 3.7 20.6 1.0 CG B:HIS160 3.8 23.0 1.0 CA C:GLU88 3.8 35.6 1.0 CZ B:ARG97 3.9 29.5 1.0 C B:GLY159 3.9 24.1 1.0 CG C:GLU88 4.0 40.8 1.0 NE2 B:HIS160 4.0 29.9 1.0 N C:LYS169 4.1 18.6 1.0 ND1 B:HIS160 4.1 27.9 1.0 NE B:ARG97 4.1 22.4 1.0 CD C:GLU88 4.2 52.1 1.0 CE1 B:HIS160 4.2 30.9 1.0 CB B:HIS160 4.2 21.4 1.0 N B:HIS160 4.3 23.9 1.0 OE2 C:GLU88 4.3 49.4 1.0 CB C:LYS169 4.4 23.7 1.0 CA C:PRO168 4.5 21.8 1.0 O C:LYS169 4.7 20.5 1.0 C C:PRO168 4.7 26.7 1.0 N B:LEU161 4.7 21.0 1.0 OE1 C:GLU88 4.7 52.5 1.0 CA C:LYS169 4.8 23.7 1.0 C B:HIS160 4.8 19.7 1.0 CG C:PRO168 4.8 16.6 1.0 N C:TYR89 4.9 29.9 1.0

Chlorine binding site 5 out of 7 in the Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl205 b:59.1 occ:1.00 NZ C:LYS175 2.9 34.7 1.0 NE2 B:GLN149 3.0 21.1 1.0 CE C:LYS175 3.1 28.6 1.0 ND2 B:ASN153 3.8 20.6 1.0 CD B:GLN149 3.9 26.3 1.0 OE1 B:GLN149 4.1 28.4 1.0 CD C:LYS175 4.3 34.2 1.0 CG B:ASN153 4.8 21.4 1.0 O C:HOH327 4.9 29.2 1.0 O B:HOH371 5.0 41.8 1.0

Chlorine binding site 6 out of 7 in the Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl206 b:61.0 occ:1.00 NE2 C:GLN149 3.5 32.0 1.0 ND2 C:ASN153 3.6 18.8 1.0 OE1 C:GLN149 3.8 26.3 1.0 CD C:GLN149 4.0 30.7 1.0 CB C:ASN153 4.4 16.6 1.0 O C:HOH365 4.4 36.8 1.0 CG C:ASN153 4.5 22.0 1.0 CA C:GLU150 4.6 24.6 1.0 O C:GLN149 4.7 22.5 1.0

Chlorine binding site 7 out of 7 in the Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl202 b:71.2 occ:1.00 O C:HOH361 3.1 36.8 1.0 NE2 D:HIS103 3.4 50.9 1.0 CD2 D:HIS103 3.9 50.6 1.0 NH1 D:ARG124 3.9 34.6 1.0 CE1 D:HIS103 3.9 47.0 1.0 O4 C:SO4201 4.0 46.5 1.0 CD C:LYS105 4.1 53.0 1.0 NH2 D:ARG124 4.1 33.6 1.0 CZ D:ARG124 4.5 34.5 1.0 CG C:LYS105 4.6 42.0 1.0 CG D:HIS103 4.6 42.2 1.0 ND1 D:HIS103 4.6 48.2 1.0 ND1 C:HIS103 4.9 40.7 1.0

J.Zhang, L.E.Gonzalez, T.M.T.Hall. Structural Analysis Reveals the Flexible C-Terminus of NOP15 Undergoes Rearrangement to Recognize A Pre-Ribosomal Rna Folding Intermediate. Nucleic Acids Res. V. 45 2829 2017.
ISSN: ESSN 1362-4962
PubMed: 27789691
DOI: 10.1093/NAR/GKW961