Atomistry » Chlorine » PDB 5trf-5u0i » 5trk
Atomistry »
  Chlorine »
    PDB 5trf-5u0i »
      5trk »

Chlorine in PDB 5trk: Crystal Structure of the Hepatitis C Virus NS5B Rna- Dependent Rna Polymerase in Complex with N-{3-[(Benzenecarbonyl)Amino]-4-[(4- Chlorophenyl)Methoxy]Benzene-1-Carbonyl}Glycine

Enzymatic activity of Crystal Structure of the Hepatitis C Virus NS5B Rna- Dependent Rna Polymerase in Complex with N-{3-[(Benzenecarbonyl)Amino]-4-[(4- Chlorophenyl)Methoxy]Benzene-1-Carbonyl}Glycine

All present enzymatic activity of Crystal Structure of the Hepatitis C Virus NS5B Rna- Dependent Rna Polymerase in Complex with N-{3-[(Benzenecarbonyl)Amino]-4-[(4- Chlorophenyl)Methoxy]Benzene-1-Carbonyl}Glycine:
2.7.7.48;

Protein crystallography data

The structure of Crystal Structure of the Hepatitis C Virus NS5B Rna- Dependent Rna Polymerase in Complex with N-{3-[(Benzenecarbonyl)Amino]-4-[(4- Chlorophenyl)Methoxy]Benzene-1-Carbonyl}Glycine, PDB code: 5trk was solved by S.Sheriff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.79 / 2.06
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.500, 91.400, 232.200, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 20.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Hepatitis C Virus NS5B Rna- Dependent Rna Polymerase in Complex with N-{3-[(Benzenecarbonyl)Amino]-4-[(4- Chlorophenyl)Methoxy]Benzene-1-Carbonyl}Glycine (pdb code 5trk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Hepatitis C Virus NS5B Rna- Dependent Rna Polymerase in Complex with N-{3-[(Benzenecarbonyl)Amino]-4-[(4- Chlorophenyl)Methoxy]Benzene-1-Carbonyl}Glycine, PDB code: 5trk:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5trk

Go back to Chlorine Binding Sites List in 5trk
Chlorine binding site 1 out of 2 in the Crystal Structure of the Hepatitis C Virus NS5B Rna- Dependent Rna Polymerase in Complex with N-{3-[(Benzenecarbonyl)Amino]-4-[(4- Chlorophenyl)Methoxy]Benzene-1-Carbonyl}Glycine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Hepatitis C Virus NS5B Rna- Dependent Rna Polymerase in Complex with N-{3-[(Benzenecarbonyl)Amino]-4-[(4- Chlorophenyl)Methoxy]Benzene-1-Carbonyl}Glycine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl602

b:75.3
occ:1.00
CL1 A:7HH602 0.0 75.3 1.0
C24 A:7HH602 1.7 73.6 1.0
C25 A:7HH602 2.7 71.6 1.0
C23 A:7HH602 2.7 72.7 1.0
H44 A:7HH602 2.8 71.7 1.0
H43 A:7HH602 2.8 72.8 1.0
CB A:PRO197 3.2 24.1 1.0
O A:MET414 3.3 13.3 1.0
CB A:LEU384 3.5 17.2 1.0
CD2 A:LEU384 3.5 31.9 1.0
CG A:PRO197 3.6 28.0 1.0
CE1 A:TYR415 3.6 16.8 1.0
CG A:LEU384 3.7 26.2 1.0
O A:HOH840 3.8 15.9 1.0
C26 A:7HH602 4.0 70.3 1.0
C22 A:7HH602 4.0 71.5 1.0
CD1 A:TYR415 4.0 14.3 1.0
CZ A:TYR415 4.0 21.2 1.0
CA A:PRO197 4.1 21.6 1.0
C A:MET414 4.1 14.1 1.0
CB A:MET414 4.4 13.7 1.0
OH A:TYR415 4.4 20.2 1.0
C21 A:7HH602 4.5 70.9 1.0
CE A:MET414 4.6 19.8 1.0
CA A:MET414 4.7 11.0 1.0
O A:LEU384 4.7 14.5 1.0
CG A:TYR415 4.7 13.3 1.0
CE2 A:TYR415 4.7 15.8 1.0
O A:HOH915 4.8 13.0 1.0
CA A:LEU384 4.8 15.2 1.0
H45 A:7HH602 4.8 70.3 1.0
H42 A:7HH602 4.8 71.4 1.0
OG A:SER368 4.9 34.2 1.0
C A:LEU384 4.9 15.3 1.0
CD A:PRO197 4.9 22.8 1.0
H47 A:7HH602 5.0 65.3 1.0
N A:TYR415 5.0 11.6 1.0
C A:PRO197 5.0 23.7 1.0

Chlorine binding site 2 out of 2 in 5trk

Go back to Chlorine Binding Sites List in 5trk
Chlorine binding site 2 out of 2 in the Crystal Structure of the Hepatitis C Virus NS5B Rna- Dependent Rna Polymerase in Complex with N-{3-[(Benzenecarbonyl)Amino]-4-[(4- Chlorophenyl)Methoxy]Benzene-1-Carbonyl}Glycine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Hepatitis C Virus NS5B Rna- Dependent Rna Polymerase in Complex with N-{3-[(Benzenecarbonyl)Amino]-4-[(4- Chlorophenyl)Methoxy]Benzene-1-Carbonyl}Glycine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl602

b:48.2
occ:1.00
CL1 B:7HH602 0.0 48.2 1.0
C24 B:7HH602 1.7 49.3 1.0
C23 B:7HH602 2.7 49.7 1.0
C25 B:7HH602 2.7 50.4 1.0
H43 B:7HH602 2.8 49.8 1.0
H44 B:7HH602 2.9 50.6 1.0
O B:MET414 3.1 16.5 1.0
CB B:PRO197 3.6 16.5 1.0
O B:HOH780 3.6 17.1 1.0
CB B:LEU384 3.7 18.9 1.0
CE1 B:TYR415 3.7 20.7 1.0
C B:MET414 4.0 18.2 1.0
C22 B:7HH602 4.0 50.8 1.0
CG B:PRO197 4.0 21.7 1.0
C26 B:7HH602 4.0 50.8 1.0
CD1 B:TYR415 4.1 17.9 1.0
CD2 B:LEU384 4.1 28.3 1.0
CZ B:TYR415 4.2 28.1 1.0
CG B:LEU384 4.3 24.9 1.0
CB B:MET414 4.3 17.3 1.0
CA B:PRO197 4.4 14.5 1.0
CE B:MET414 4.5 22.8 1.0
C21 B:7HH602 4.5 51.8 1.0
CA B:MET414 4.5 14.7 1.0
OH B:TYR415 4.5 29.6 1.0
O B:HOH853 4.5 17.6 1.0
CG B:TYR415 4.8 17.4 1.0
O B:LEU384 4.8 14.8 1.0
H42 B:7HH602 4.8 51.1 1.0
OG B:SER368 4.8 33.7 1.0
CE2 B:TYR415 4.8 19.6 1.0
H45 B:7HH602 4.8 50.6 1.0
N B:TYR415 4.9 13.8 1.0
CA B:LEU384 5.0 17.6 1.0

Reference:

K.Parcella, A.Nickel, B.R.Beno, S.Sheriff, C.Wan, Y.K.Wang, S.B.Roberts, N.A.Meanwell, J.F.Kadow. Discovery and Initial Optimization of Alkoxyanthranilic Acid Derivatives As Inhibitors of Hcv NS5B Polymerase. Bioorg. Med. Chem. Lett. V. 27 295 2017.
ISSN: ESSN 1464-3405
PubMed: 27908764
DOI: 10.1016/J.BMCL.2016.11.054
Page generated: Sat Jul 12 09:04:37 2025

Last articles

Na in 6LFW
Na in 6LFH
Na in 6LEH
Na in 6LDW
Na in 6L85
Na in 6LBL
Na in 6L9C
Na in 6L55
Na in 6KUZ
Na in 6L4P
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy