Chlorine in PDB 5tvh: Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21
Protein crystallography data
The structure of Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21, PDB code: 5tvh
was solved by
G.A.Camacho-Hernandez,
K.Kaczanowska,
M.Harel,
M.G.Finn,
P.W.Taylor,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.47 /
2.40
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
67.780,
88.100,
115.500,
90.00,
97.50,
90.00
|
R / Rfree (%)
|
19.1 /
24.7
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21
(pdb code 5tvh). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21, PDB code: 5tvh:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 5tvh
Go back to
Chlorine Binding Sites List in 5tvh
Chlorine binding site 1 out
of 5 in the Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl301
b:44.4
occ:1.00
|
CL6
|
A:7KO301
|
0.0
|
44.4
|
1.0
|
C6
|
A:7KO301
|
1.8
|
39.9
|
1.0
|
N1
|
A:7KO301
|
2.7
|
32.4
|
1.0
|
C5
|
A:7KO301
|
2.8
|
29.5
|
1.0
|
OG1
|
E:THR36
|
3.3
|
13.8
|
1.0
|
CD1
|
E:TYR55
|
3.7
|
18.9
|
1.0
|
C2
|
A:7KO301
|
3.9
|
23.8
|
1.0
|
CB
|
E:THR36
|
4.1
|
14.0
|
1.0
|
C4
|
A:7KO301
|
4.1
|
27.6
|
1.0
|
CB
|
E:TYR55
|
4.2
|
17.0
|
1.0
|
CG
|
E:TYR55
|
4.4
|
16.8
|
1.0
|
CG2
|
E:ILE118
|
4.4
|
17.1
|
1.0
|
CG2
|
E:THR36
|
4.4
|
14.8
|
1.0
|
N3
|
A:7KO301
|
4.6
|
27.4
|
1.0
|
CE1
|
E:TYR55
|
4.6
|
25.1
|
1.0
|
CB
|
A:CYS190
|
4.6
|
34.4
|
1.0
|
CD1
|
E:ILE118
|
4.9
|
24.4
|
1.0
|
SG
|
A:CYS190
|
5.0
|
53.9
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 5tvh
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Chlorine Binding Sites List in 5tvh
Chlorine binding site 2 out
of 5 in the Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl301
b:77.5
occ:1.00
|
CL6
|
B:7KO301
|
0.0
|
77.5
|
1.0
|
C6
|
B:7KO301
|
1.7
|
56.9
|
1.0
|
N1
|
B:7KO301
|
2.6
|
55.8
|
1.0
|
C5
|
B:7KO301
|
2.6
|
44.9
|
1.0
|
OG1
|
A:THR36
|
3.8
|
22.7
|
1.0
|
CD1
|
A:TYR55
|
3.8
|
26.0
|
1.0
|
C2
|
B:7KO301
|
3.9
|
57.0
|
1.0
|
C4
|
B:7KO301
|
3.9
|
52.1
|
1.0
|
CB
|
A:TYR55
|
4.4
|
20.0
|
1.0
|
CB
|
A:THR36
|
4.4
|
22.8
|
1.0
|
N3
|
B:7KO301
|
4.5
|
47.6
|
1.0
|
CG
|
A:TYR55
|
4.6
|
22.5
|
1.0
|
CG2
|
A:ILE118
|
4.6
|
14.8
|
1.0
|
CE1
|
A:TYR55
|
4.7
|
28.1
|
1.0
|
CG2
|
A:THR36
|
4.7
|
18.2
|
1.0
|
CD1
|
A:ILE118
|
4.7
|
18.4
|
1.0
|
NAA
|
B:7KO301
|
5.0
|
55.7
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 5tvh
Go back to
Chlorine Binding Sites List in 5tvh
Chlorine binding site 3 out
of 5 in the Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl301
b:60.3
occ:1.00
|
CL6
|
C:7KO301
|
0.0
|
60.3
|
1.0
|
C6
|
C:7KO301
|
1.7
|
39.3
|
1.0
|
N1
|
C:7KO301
|
2.6
|
42.5
|
1.0
|
C5
|
C:7KO301
|
2.7
|
31.4
|
1.0
|
OG1
|
B:THR36
|
3.5
|
21.2
|
1.0
|
CD1
|
B:TYR55
|
3.7
|
32.2
|
1.0
|
C2
|
C:7KO301
|
3.9
|
31.2
|
1.0
|
C4
|
C:7KO301
|
4.0
|
30.6
|
1.0
|
CB
|
B:THR36
|
4.1
|
21.4
|
1.0
|
CB
|
B:TYR55
|
4.3
|
28.6
|
1.0
|
CG2
|
B:THR36
|
4.4
|
26.2
|
1.0
|
CG
|
B:TYR55
|
4.5
|
26.5
|
1.0
|
N3
|
C:7KO301
|
4.5
|
29.0
|
1.0
|
CE1
|
B:TYR55
|
4.6
|
28.4
|
1.0
|
CG2
|
B:ILE118
|
4.6
|
22.3
|
1.0
|
CD1
|
B:ILE118
|
4.7
|
21.4
|
1.0
|
NAA
|
C:7KO301
|
4.9
|
34.1
|
1.0
|
OD2
|
B:ASP164
|
5.0
|
29.7
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 5tvh
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Chlorine Binding Sites List in 5tvh
Chlorine binding site 4 out
of 5 in the Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl302
b:60.4
occ:1.00
|
CL6
|
C:7KO302
|
0.0
|
60.4
|
1.0
|
C6
|
C:7KO302
|
1.7
|
48.3
|
1.0
|
N1
|
C:7KO302
|
2.6
|
48.4
|
1.0
|
C5
|
C:7KO302
|
2.7
|
42.3
|
1.0
|
OG1
|
C:THR36
|
3.5
|
25.0
|
1.0
|
CD1
|
C:TYR55
|
3.9
|
26.8
|
1.0
|
C2
|
C:7KO302
|
3.9
|
45.3
|
1.0
|
C4
|
C:7KO302
|
4.0
|
42.9
|
1.0
|
CB
|
C:THR36
|
4.2
|
24.5
|
1.0
|
CB
|
C:TYR55
|
4.4
|
22.5
|
1.0
|
CG2
|
C:ILE118
|
4.5
|
20.5
|
1.0
|
OE1
|
C:GLN57
|
4.5
|
37.3
|
1.0
|
N3
|
C:7KO302
|
4.5
|
46.0
|
1.0
|
CG2
|
C:THR36
|
4.6
|
21.4
|
1.0
|
CG
|
C:TYR55
|
4.6
|
29.7
|
1.0
|
CD1
|
C:ILE118
|
4.7
|
27.6
|
1.0
|
CE1
|
C:TYR55
|
4.8
|
28.7
|
1.0
|
NAA
|
C:7KO302
|
5.0
|
43.3
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 5tvh
Go back to
Chlorine Binding Sites List in 5tvh
Chlorine binding site 5 out
of 5 in the Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 8.0 Spacegroup P21 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl301
b:52.4
occ:1.00
|
CL6
|
E:7KO301
|
0.0
|
52.4
|
1.0
|
C6
|
E:7KO301
|
1.7
|
41.1
|
1.0
|
N1
|
E:7KO301
|
2.6
|
41.4
|
1.0
|
C5
|
E:7KO301
|
2.7
|
32.7
|
1.0
|
OG1
|
D:THR36
|
3.5
|
23.1
|
1.0
|
C2
|
E:7KO301
|
3.9
|
42.0
|
1.0
|
C4
|
E:7KO301
|
4.0
|
33.9
|
1.0
|
CD1
|
D:TYR55
|
4.1
|
24.8
|
1.0
|
CG2
|
D:ILE118
|
4.2
|
18.4
|
1.0
|
NE2
|
D:GLN57
|
4.2
|
51.5
|
1.0
|
CB
|
D:THR36
|
4.4
|
24.3
|
1.0
|
N3
|
E:7KO301
|
4.5
|
40.5
|
1.0
|
CB
|
E:CYS190
|
4.5
|
43.4
|
1.0
|
CB
|
D:TYR55
|
4.6
|
24.1
|
1.0
|
CG2
|
D:THR36
|
4.8
|
21.9
|
1.0
|
CG
|
D:TYR55
|
4.9
|
27.2
|
1.0
|
CD
|
D:GLN57
|
4.9
|
48.8
|
1.0
|
CE1
|
D:TYR55
|
5.0
|
28.6
|
1.0
|
NAA
|
E:7KO301
|
5.0
|
38.2
|
1.0
|
|
Reference:
G.A.Camacho-Hernandez,
K.Kaczanowska,
M.Harel,
M.G.Finn,
P.W.Taylor.
Crystal Structure of Achbp From Aplysia Californica Complex with 2-Aminopyrimidine at pH 7.0 Spacegroup P212121 To Be Published.
Page generated: Fri Jul 26 17:44:24 2024
|