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Chlorine in PDB 5ucv: Crystal Structure of A Ribosome Biogenesis Gtp-Binding Protein (Ysxc) From Neisseria Gonorrhoeae with Bound Gdp

Protein crystallography data

The structure of Crystal Structure of A Ribosome Biogenesis Gtp-Binding Protein (Ysxc) From Neisseria Gonorrhoeae with Bound Gdp, PDB code: 5ucv was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.20 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.110, 68.440, 126.890, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 20.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Ribosome Biogenesis Gtp-Binding Protein (Ysxc) From Neisseria Gonorrhoeae with Bound Gdp (pdb code 5ucv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of A Ribosome Biogenesis Gtp-Binding Protein (Ysxc) From Neisseria Gonorrhoeae with Bound Gdp, PDB code: 5ucv:

Chlorine binding site 1 out of 1 in 5ucv

Go back to Chlorine Binding Sites List in 5ucv
Chlorine binding site 1 out of 1 in the Crystal Structure of A Ribosome Biogenesis Gtp-Binding Protein (Ysxc) From Neisseria Gonorrhoeae with Bound Gdp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Ribosome Biogenesis Gtp-Binding Protein (Ysxc) From Neisseria Gonorrhoeae with Bound Gdp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:21.1
occ:1.00
O A:HOH528 3.0 24.4 1.0
NH1 B:ARG169 3.2 20.6 1.0
O A:HOH512 3.2 19.4 1.0
N A:GLU121 3.3 13.9 1.0
O B:HOH421 3.3 35.5 1.0
CA A:LYS120 3.8 14.2 1.0
CD A:LYS120 3.8 33.1 1.0
CD B:ARG169 3.9 27.0 1.0
CG B:ARG169 3.9 24.0 1.0
CG2 B:THR132 4.0 14.1 1.0
C A:LYS120 4.0 10.6 1.0
CB A:GLU121 4.1 11.7 1.0
CA B:THR132 4.1 11.3 1.0
CE1 B:HIS131 4.1 19.2 1.0
CB A:LYS120 4.2 15.5 1.0
CA A:GLU121 4.2 12.6 1.0
CZ B:ARG169 4.3 24.9 1.0
ND1 B:HIS131 4.3 18.5 1.0
CB B:THR132 4.4 13.7 1.0
NE B:ARG169 4.5 19.9 1.0
CG A:LYS120 4.6 21.5 1.0
O B:THR132 4.8 12.1 1.0
O A:HOH498 4.9 14.9 1.0
N B:THR132 4.9 8.1 1.0
O A:LEU119 4.9 15.7 1.0
O B:HIS131 4.9 11.7 1.0
O B:HOH546 5.0 44.1 1.0
C B:THR132 5.0 9.0 1.0

Reference:

D.M.Dranow, S.J.Mayclin, D.D.Lorimer, T.E.Edwards. Crystal Structure of A Ribosome Biogenesis Gtp-Binding Protein (Ysxc) From Neisseria Gonorrhoeae with Bound Gdp To Be Published.
Page generated: Sat Jul 12 09:18:53 2025

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