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Chlorine in PDB 5upg: Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Pf-5081090

Enzymatic activity of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Pf-5081090

All present enzymatic activity of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Pf-5081090:
3.5.1.108;

Protein crystallography data

The structure of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Pf-5081090, PDB code: 5upg was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.91 / 1.70
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 35.840, 47.400, 48.150, 111.27, 109.12, 98.12
R / Rfree (%) 14.7 / 18.6

Other elements in 5upg:

The structure of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Pf-5081090 also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Pf-5081090 (pdb code 5upg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Pf-5081090, PDB code: 5upg:

Chlorine binding site 1 out of 1 in 5upg

Go back to Chlorine Binding Sites List in 5upg
Chlorine binding site 1 out of 1 in the Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Pf-5081090


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Pf-5081090 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:17.9
occ:0.85
ZN A:ZN404 2.0 14.8 0.6
NH1 A:ARG133 3.1 34.5 1.0
OD2 A:ASP279 3.2 22.9 1.0
OD2 A:ASP277 3.4 19.1 1.0
OD1 A:ASP277 3.4 16.0 1.0
CD A:ARG133 3.8 14.4 1.0
CG A:ASP277 3.8 12.2 1.0
CG A:ASP279 3.9 25.8 1.0
OD1 A:ASP279 4.1 25.1 1.0
CZ A:ARG133 4.2 33.0 1.0
NE A:ARG133 4.4 21.1 1.0

Reference:

J.N.Phan, S.L.Delker, D.D.Lorimer, T.E.Edwards. Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Pf-5081090 To Be Published.
Page generated: Sat Jul 12 09:26:50 2025

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