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Chlorine in PDB 5uvj: Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation

Enzymatic activity of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation

All present enzymatic activity of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation:
3.2.1.17;

Protein crystallography data

The structure of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation, PDB code: 5uvj was solved by J.M.Martin-Garcia, C.E.Conrad, G.Nelson, N.Stander, N.A.Zatsepin, J.Zook, L.Zhu, J.Geiger, E.Chun, D.Kissick, M.C.Hilgart, C.Ogata, A.Ishchenko, N.Nagaratnam, S.Roy-Chowdhury, J.Coe, G.Subramanian, A.Schaffer, D.James, G.Ketawala, N.Venugopalan, S.Xu, S.Corcoran, D.Ferguson, U.Weierstall, J.C.H.Spence, V.Cherezov, P.Fromme, R.F.Fischetti, W.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.05
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.100, 79.100, 38.000, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 26.8

Other elements in 5uvj:

The structure of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation (pdb code 5uvj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation, PDB code: 5uvj:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5uvj

Go back to Chlorine Binding Sites List in 5uvj
Chlorine binding site 1 out of 3 in the Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:54.7
occ:1.00
 O A:HOH310 2.9 34.2 1.0
N A:THR69 3.2 37.7 1.0
OD1 A:ASN65 3.2 35.6 1.0
O A:THR69 3.4 40.9 1.0
N A:GLY67 3.5 30.2 1.0
CA A:GLY67 3.5 31.9 1.0
N A:ARG68 3.5 31.7 1.0
C A:GLY67 3.6 32.1 1.0
C A:THR69 3.7 42.0 1.0
OG A:SER72 3.8 37.1 1.0
CA A:THR69 3.8 38.6 1.0
CB A:THR69 4.2 34.2 1.0
OD1 A:ASP66 4.2 32.1 1.0
C A:ARG68 4.2 34.7 1.0
O A:GLY67 4.2 36.8 1.0
O A:HOH318 4.3 31.5 1.0
CA A:ARG68 4.3 32.9 1.0
CG A:ASN65 4.4 32.4 1.0
N A:ASP66 4.5 28.9 1.0
N A:PRO70 4.5 47.0 1.0
C A:ASP66 4.6 30.1 1.0
NA A:NA204 4.7 36.8 1.0
OG1 A:THR69 4.9 29.4 1.0

Chlorine binding site 2 out of 3 in 5uvj

Go back to Chlorine Binding Sites List in 5uvj
Chlorine binding site 2 out of 3 in the Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:34.1
occ:1.00
 OH A:TYR23 2.9 28.0 1.0
CZ A:TYR23 3.6 25.6 1.0
CE2 A:TYR23 3.7 25.1 1.0
CA A:GLY104 4.2 33.9 1.0
O A:ARG21 4.7 34.3 1.0
N A:GLY104 4.8 33.5 1.0
CE1 A:TYR23 4.8 26.3 1.0
CD2 A:TYR23 4.9 24.9 1.0

Chlorine binding site 3 out of 3 in 5uvj

Go back to Chlorine Binding Sites List in 5uvj
Chlorine binding site 3 out of 3 in the Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:57.1
occ:1.00
 OG A:SER24 2.9 34.4 1.0
N A:GLY26 3.1 22.5 1.0
CA A:GLY26 3.4 22.2 1.0
CB A:SER24 3.4 28.6 1.0
CA A:GLN121 3.5 41.9 1.0
N A:GLN121 3.9 37.8 1.0
CB A:GLN121 3.9 48.3 1.0
CD1 A:ILE124 4.0 42.9 1.0
N A:LEU25 4.1 26.1 1.0
CG A:GLN121 4.1 59.6 1.0
C A:SER24 4.2 28.1 1.0
C A:VAL120 4.3 35.9 1.0
CG2 A:VAL120 4.3 30.0 1.0
C A:LEU25 4.3 24.2 1.0
O A:VAL120 4.3 37.1 1.0
CG1 A:ILE124 4.3 41.5 1.0
CA A:SER24 4.4 28.7 1.0
C A:GLY26 4.5 22.5 1.0
O A:SER24 4.6 27.6 1.0
N A:ASN27 4.7 22.6 1.0
CA A:LEU25 4.7 26.1 1.0
C A:GLN121 4.8 36.3 1.0
O A:GLN121 5.0 33.2 1.0

Reference:

J.M.Martin-Garcia, C.E.Conrad, G.Nelson, N.Stander, N.A.Zatsepin, J.Zook, L.Zhu, J.Geiger, E.Chun, D.Kissick, M.C.Hilgart, C.Ogata, A.Ishchenko, N.Nagaratnam, S.Roy-Chowdhury, J.Coe, G.Subramanian, A.Schaffer, D.James, G.Ketwala, N.Venugopalan, S.Xu, S.Corcoran, D.Ferguson, U.Weierstall, J.C.H.Spence, V.Cherezov, P.Fromme, R.F.Fischetti, W.Liu. Serial Millisecond Crystallography of Membrane and Soluble Protein Microcrystals Using Synchrotron Radiation. Iucrj V. 4 439 2017.
ISSN: ESSN 2052-2525
PubMed: 28875031
DOI: 10.1107/S205225251700570X
Page generated: Fri Jul 26 18:24:15 2024

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