Atomistry » Chlorine » PDB 5v4h-5vc4 » 5v4h
Atomistry »
  Chlorine »
    PDB 5v4h-5vc4 »
      5v4h »

Chlorine in PDB 5v4h: Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct Formed When Ruthenium(II)(Cymene)(Bromido)2 Underwent Ligand Exchange, Resulting in One Binding Site

Enzymatic activity of Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct Formed When Ruthenium(II)(Cymene)(Bromido)2 Underwent Ligand Exchange, Resulting in One Binding Site

All present enzymatic activity of Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct Formed When Ruthenium(II)(Cymene)(Bromido)2 Underwent Ligand Exchange, Resulting in One Binding Site:
3.2.1.17;

Protein crystallography data

The structure of Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct Formed When Ruthenium(II)(Cymene)(Bromido)2 Underwent Ligand Exchange, Resulting in One Binding Site, PDB code: 5v4h was solved by M.P.Sullivan, C.G.Hartinger, D.C.Goldstone, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.79 / 1.22
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.320, 80.320, 36.590, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 19

Other elements in 5v4h:

The structure of Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct Formed When Ruthenium(II)(Cymene)(Bromido)2 Underwent Ligand Exchange, Resulting in One Binding Site also contains other interesting chemical elements:

Ruthenium (Ru) 1 atom
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct Formed When Ruthenium(II)(Cymene)(Bromido)2 Underwent Ligand Exchange, Resulting in One Binding Site (pdb code 5v4h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct Formed When Ruthenium(II)(Cymene)(Bromido)2 Underwent Ligand Exchange, Resulting in One Binding Site, PDB code: 5v4h:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5v4h

Go back to Chlorine Binding Sites List in 5v4h
Chlorine binding site 1 out of 2 in the Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct Formed When Ruthenium(II)(Cymene)(Bromido)2 Underwent Ligand Exchange, Resulting in One Binding Site


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct Formed When Ruthenium(II)(Cymene)(Bromido)2 Underwent Ligand Exchange, Resulting in One Binding Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:24.6
occ:0.80
 CL1 A:RU7202 0.0 24.6 0.8
RU1 A:RU7202 2.4 21.9 0.8
NE2 A:HIS15 3.2 19.8 1.0
CD2 A:HIS15 3.2 19.1 1.0
CL2 A:RU7202 3.3 23.1 0.8
C5 A:RU7202 3.3 24.8 0.8
C6 A:RU7202 3.3 25.1 0.8
CB A:ALA11 3.6 16.6 1.0
CA A:ALA11 3.7 16.3 1.0
C4 A:RU7202 4.0 25.6 0.8
C1 A:RU7202 4.0 23.4 0.8
O A:ALA11 4.0 16.7 1.0
CG A:ARG14 4.1 29.0 0.5
CB A:ARG14 4.1 23.5 0.5
CB A:ARG14 4.2 24.6 0.5
CG A:ARG14 4.3 27.6 0.5
C A:ALA11 4.3 15.9 1.0
C3 A:RU7202 4.5 24.4 0.8
CE1 A:HIS15 4.5 20.2 1.0
C2 A:RU7202 4.5 22.5 0.8
CG A:HIS15 4.6 18.2 1.0
CD A:ARG14 4.6 30.9 0.5
NE A:ARG14 4.7 31.3 0.5
C7 A:RU7202 4.7 26.2 0.8
C10 A:RU7202 4.8 30.4 0.8
C8 A:RU7202 4.8 29.7 0.8
N A:ALA11 4.9 17.2 1.0

Chlorine binding site 2 out of 2 in 5v4h

Go back to Chlorine Binding Sites List in 5v4h
Chlorine binding site 2 out of 2 in the Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct Formed When Ruthenium(II)(Cymene)(Bromido)2 Underwent Ligand Exchange, Resulting in One Binding Site


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct Formed When Ruthenium(II)(Cymene)(Bromido)2 Underwent Ligand Exchange, Resulting in One Binding Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:23.1
occ:0.80
 CL2 A:RU7202 0.0 23.1 0.8
RU1 A:RU7202 2.4 21.9 0.8
NE2 A:HIS15 3.1 19.8 1.0
CL1 A:RU7202 3.3 24.6 0.8
C1 A:RU7202 3.3 23.4 0.8
N A:ILE88 3.3 14.7 1.0
C7 A:RU7202 3.3 26.2 0.8
C2 A:RU7202 3.4 22.5 0.8
CE1 A:HIS15 3.7 20.2 1.0
CG1 A:ILE88 3.8 15.2 1.0
O A:HOH317 3.8 24.6 1.0
CA A:ASP87 3.8 17.3 1.0
C6 A:RU7202 3.9 25.1 0.8
CD2 A:HIS15 4.0 19.1 1.0
C3 A:RU7202 4.0 24.4 0.8
OD1 A:ASP87 4.0 21.0 1.0
C A:ASP87 4.0 15.6 1.0
O A:SER86 4.2 19.0 1.0
CA A:ILE88 4.3 14.2 1.0
CB A:ILE88 4.3 15.2 1.0
CG2 A:ILE88 4.4 16.4 1.0
CG A:ASP87 4.4 21.3 1.0
C5 A:RU7202 4.5 24.8 0.8
C4 A:RU7202 4.6 25.6 0.8
CB A:ASP87 4.6 19.2 1.0
CD1 A:ILE88 4.6 16.4 1.0
ND1 A:HIS15 4.8 18.8 1.0
N A:ASP87 4.8 15.7 1.0
CB A:ALA11 4.8 16.6 1.0
N A:THR89 4.8 16.1 1.0
C A:SER86 5.0 16.4 1.0
CG A:HIS15 5.0 18.2 1.0
C A:ILE88 5.0 15.0 1.0

Reference:

M.P.Sullivan, M.Groessl, S.M.Meier, R.L.Kingston, D.C.Goldstone, C.G.Hartinger. The Metalation of Hen Egg White Lysozyme Impacts Protein Stability As Shown By Ion Mobility Mass Spectrometry, Differential Scanning Calorimetry, and X-Ray Crystallography. Chem. Commun. (Camb.) V. 53 4246 2017.
ISSN: ESSN 1364-548X
PubMed: 28361137
DOI: 10.1039/C6CC10150J
Page generated: Sat Jul 12 09:43:32 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy