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Chlorine in PDB 5v4i: Osmium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with One Binding Site

Enzymatic activity of Osmium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with One Binding Site

All present enzymatic activity of Osmium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with One Binding Site:
3.2.1.17;

Protein crystallography data

The structure of Osmium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with One Binding Site, PDB code: 5v4i was solved by M.P.Sullivan, C.G.Hartinger, D.C.Goldstone, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.594, 80.594, 36.987, 90.00, 90.00, 90.00
R / Rfree (%) 23 / 27.8

Other elements in 5v4i:

The structure of Osmium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with One Binding Site also contains other interesting chemical elements:

Osmium (Os) 1 atom
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Osmium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with One Binding Site (pdb code 5v4i). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Osmium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with One Binding Site, PDB code: 5v4i:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5v4i

Go back to Chlorine Binding Sites List in 5v4i
Chlorine binding site 1 out of 2 in the Osmium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with One Binding Site


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Osmium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with One Binding Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:30.5
occ:0.90
CL03 A:8WV202 0.0 30.5 0.9
OS02 A:8WV202 2.4 27.0 0.9
CL13 A:8WV202 3.2 28.0 0.9
NE2 A:HIS15 3.2 19.4 1.0
CD2 A:HIS15 3.3 17.9 1.0
C04 A:8WV202 3.3 26.7 0.9
C11 A:8WV202 3.4 27.3 0.9
CB A:ALA11 3.6 18.2 1.0
CA A:ALA11 3.7 18.3 1.0
C07 A:8WV202 4.0 26.4 0.9
O A:ALA11 4.0 18.7 1.0
C08 A:8WV202 4.0 28.9 0.9
C A:ALA11 4.3 16.7 1.0
C12 A:8WV202 4.4 31.0 0.9
CB A:ARG14 4.4 25.1 1.0
C05 A:8WV202 4.5 28.8 0.9
CE1 A:HIS15 4.5 20.5 1.0
C06 A:8WV202 4.5 27.4 0.9
CG A:HIS15 4.6 18.1 1.0
C01 A:8WV202 4.7 30.1 0.9
C09 A:8WV202 4.8 30.4 0.9
N A:ALA11 4.9 18.2 1.0

Chlorine binding site 2 out of 2 in 5v4i

Go back to Chlorine Binding Sites List in 5v4i
Chlorine binding site 2 out of 2 in the Osmium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with One Binding Site


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Osmium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with One Binding Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:28.0
occ:0.90
CL13 A:8WV202 0.0 28.0 0.9
OS02 A:8WV202 2.4 27.0 0.9
NE2 A:HIS15 3.0 19.4 1.0
CL03 A:8WV202 3.2 30.5 0.9
N A:ILE88 3.3 13.7 1.0
C07 A:8WV202 3.3 26.4 0.9
C06 A:8WV202 3.4 27.4 0.9
C01 A:8WV202 3.5 30.1 0.9
CE1 A:HIS15 3.7 20.5 1.0
CG1 A:ILE88 3.8 16.4 1.0
CA A:ASP87 3.8 17.9 1.0
O A:HOH317 3.9 27.2 1.0
C04 A:8WV202 3.9 26.7 0.9
CD2 A:HIS15 3.9 17.9 1.0
C05 A:8WV202 4.0 28.8 0.9
C A:ASP87 4.0 17.9 1.0
OD1 A:ASP87 4.1 21.1 1.0
O A:SER86 4.3 20.9 1.0
CA A:ILE88 4.3 16.6 1.0
CB A:ILE88 4.4 17.2 1.0
CG A:ASP87 4.5 21.7 1.0
C11 A:8WV202 4.5 27.3 0.9
C08 A:8WV202 4.6 28.9 0.9
CG2 A:ILE88 4.6 17.6 1.0
CD1 A:ILE88 4.7 14.0 1.0
CB A:ASP87 4.7 19.8 1.0
ND1 A:HIS15 4.8 19.4 1.0
N A:ASP87 4.9 18.4 1.0
N A:THR89 4.9 17.0 1.0
CB A:ALA11 4.9 18.2 1.0
CG A:HIS15 4.9 18.1 1.0
C A:SER86 5.0 18.4 1.0

Reference:

M.P.Sullivan, M.Groessl, S.M.Meier, R.L.Kingston, D.C.Goldstone, C.G.Hartinger. The Metalation of Hen Egg White Lysozyme Impacts Protein Stability As Shown By Ion Mobility Mass Spectrometry, Differential Scanning Calorimetry, and X-Ray Crystallography. Chem. Commun. (Camb.) V. 53 4246 2017.
ISSN: ESSN 1364-548X
PubMed: 28361137
DOI: 10.1039/C6CC10150J
Page generated: Sat Jul 12 09:43:32 2025

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