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Chlorine in PDB 5vgm: Crystal Structure of Dihydroorotase Pyrc From Vibrio Cholerae in Complex with Zinc at 1.95 A Resolution.

Enzymatic activity of Crystal Structure of Dihydroorotase Pyrc From Vibrio Cholerae in Complex with Zinc at 1.95 A Resolution.

All present enzymatic activity of Crystal Structure of Dihydroorotase Pyrc From Vibrio Cholerae in Complex with Zinc at 1.95 A Resolution.:
3.5.2.3;

Protein crystallography data

The structure of Crystal Structure of Dihydroorotase Pyrc From Vibrio Cholerae in Complex with Zinc at 1.95 A Resolution., PDB code: 5vgm was solved by J.Lipowska, I.G.Shabalin, C.D.Miks, J.Winsor, D.R.Cooper, L.Shuvalova, K.Kwon, K.Lewinski, W.F.Anderson, W.Minor, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.95
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 62.507, 57.257, 87.524, 90.00, 105.09, 90.00
R / Rfree (%) 16.8 / 20.3

Other elements in 5vgm:

The structure of Crystal Structure of Dihydroorotase Pyrc From Vibrio Cholerae in Complex with Zinc at 1.95 A Resolution. also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Dihydroorotase Pyrc From Vibrio Cholerae in Complex with Zinc at 1.95 A Resolution. (pdb code 5vgm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Dihydroorotase Pyrc From Vibrio Cholerae in Complex with Zinc at 1.95 A Resolution., PDB code: 5vgm:

Chlorine binding site 1 out of 1 in 5vgm

Go back to Chlorine Binding Sites List in 5vgm
Chlorine binding site 1 out of 1 in the Crystal Structure of Dihydroorotase Pyrc From Vibrio Cholerae in Complex with Zinc at 1.95 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Dihydroorotase Pyrc From Vibrio Cholerae in Complex with Zinc at 1.95 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:53.7
occ:1.00
 N B:LEU284 3.3 34.4 1.0
O B:HOH564 3.3 68.0 1.0
C B:GLY282 3.4 34.1 1.0
CB B:LEU284 3.5 36.8 1.0
N B:LYS283 3.6 33.4 1.0
CD1 B:LEU284 3.7 46.4 1.0
CA B:GLY282 3.7 34.1 1.0
CG B:LEU284 3.7 37.9 1.0
O B:GLY282 3.7 35.8 1.0
CA B:LEU284 4.0 34.5 1.0
OE1 B:GLU285 4.1 51.4 1.0
C B:LYS283 4.3 36.8 1.0
CA B:LYS283 4.3 32.6 1.0
O B:GLU279 4.7 37.2 1.0
N B:GLY282 4.7 39.1 1.0
O B:PHE278 4.7 35.2 1.0
CA B:GLU279 4.8 38.0 1.0
N B:GLU285 4.9 37.6 1.0
C B:LEU284 5.0 34.9 1.0

Reference:

J.Lipowska, C.D.Miks, K.Kwon, L.Shuvalova, H.Zheng, K.Lewinski, D.R.Cooper, I.G.Shabalin, W.Minor. Pyrimidine Biosynthesis in Pathogens - Structures and Analysis of Dihydroorotases From Yersinia Pestis and Vibrio Cholerae. Int.J.Biol.Macromol. V. 136 1176 2019.
ISSN: ISSN 0141-8130
PubMed: 31207330
DOI: 10.1016/J.IJBIOMAC.2019.05.149
Page generated: Fri Jul 26 18:49:06 2024

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