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Chlorine in PDB 5vnq: Neutron Crystallographic Strucutre of Perdeuterated T4 Lysozyme Cysteine-Free Pseudo-Wild Type at Cryogenic Temperature

Enzymatic activity of Neutron Crystallographic Strucutre of Perdeuterated T4 Lysozyme Cysteine-Free Pseudo-Wild Type at Cryogenic Temperature

All present enzymatic activity of Neutron Crystallographic Strucutre of Perdeuterated T4 Lysozyme Cysteine-Free Pseudo-Wild Type at Cryogenic Temperature:
3.2.1.17;

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Neutron Crystallographic Strucutre of Perdeuterated T4 Lysozyme Cysteine-Free Pseudo-Wild Type at Cryogenic Temperature (pdb code 5vnq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Neutron Crystallographic Strucutre of Perdeuterated T4 Lysozyme Cysteine-Free Pseudo-Wild Type at Cryogenic Temperature, PDB code: 5vnq:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5vnq

Go back to Chlorine Binding Sites List in 5vnq
Chlorine binding site 1 out of 2 in the Neutron Crystallographic Strucutre of Perdeuterated T4 Lysozyme Cysteine-Free Pseudo-Wild Type at Cryogenic Temperature


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Neutron Crystallographic Strucutre of Perdeuterated T4 Lysozyme Cysteine-Free Pseudo-Wild Type at Cryogenic Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:6.8
occ:1.00
D2 A:DOD329 2.0 9.8 0.0
D A:ARG145 2.6 7.6 0.8
H A:ARG145 2.6 7.6 0.2
O A:DOD329 2.7 10.2 1.0
DB2 A:ASN144 2.7 6.7 1.0
D1 A:DOD329 2.7 9.8 0.3
H A:ASN144 3.1 6.7 0.0
D A:ASN144 3.1 6.7 1.0
DB2 A:ARG145 3.4 11.9 1.0
DD2 A:PRO143 3.5 7.3 1.0
DA A:THR142 3.5 7.2 1.0
DB A:THR142 3.5 5.0 1.0
N A:ARG145 3.6 8.5 1.0
CB A:ASN144 3.7 8.0 1.0
N A:ASN144 3.7 7.9 1.0
D2 A:DOD310 3.9 11.5 0.6
DG22 A:THR142 4.0 11.3 1.0
C A:THR142 4.0 7.0 1.0
CA A:THR142 4.1 8.6 1.0
DB3 A:ARG145 4.1 11.9 1.0
N A:PRO143 4.1 7.7 1.0
CA A:ASN144 4.1 9.1 1.0
CB A:ARG145 4.1 12.0 1.0
CB A:THR142 4.2 6.7 1.0
CD A:PRO143 4.3 8.3 1.0
C A:ASN144 4.4 8.8 1.0
DB3 A:ASN144 4.4 6.7 1.0
CA A:ARG145 4.5 10.7 1.0
O A:THR142 4.5 11.5 1.0
CG A:ASN144 4.5 7.7 1.0
O A:DOD310 4.5 13.1 1.0
CG2 A:THR142 4.6 11.9 1.0
C A:PRO143 4.6 11.1 1.0
DG2 A:PRO143 4.7 7.6 1.0
ND2 A:ASN144 4.7 8.1 1.0
D1 A:DOD310 4.8 11.5 1.0
HH12 A:ARG148 4.9 14.2 0.0
DH12 A:ARG148 4.9 14.2 1.0
H A:ALA146 4.9 11.6 0.1
D A:ALA146 4.9 11.6 0.9
DD21 A:ASN144 5.0 6.9 0.8
HD21 A:ASN144 5.0 6.9 0.2
CA A:PRO143 5.0 5.5 1.0

Chlorine binding site 2 out of 2 in 5vnq

Go back to Chlorine Binding Sites List in 5vnq
Chlorine binding site 2 out of 2 in the Neutron Crystallographic Strucutre of Perdeuterated T4 Lysozyme Cysteine-Free Pseudo-Wild Type at Cryogenic Temperature


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Neutron Crystallographic Strucutre of Perdeuterated T4 Lysozyme Cysteine-Free Pseudo-Wild Type at Cryogenic Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:4.9
occ:1.00
DA A:LYS135 3.4 9.5 1.0
DB3 A:LYS135 3.5 8.6 1.0
C A:LYS135 3.7 10.5 1.0
DD21 A:ASN140 3.8 10.9 0.4
HD21 A:ASN140 3.8 10.9 0.6
N A:SER136 3.8 11.3 1.0
H A:SER136 3.9 10.6 0.2
D A:SER136 3.9 10.6 0.8
CA A:LYS135 4.0 9.6 1.0
O A:LYS135 4.1 12.2 1.0
DA A:SER136 4.3 8.1 1.0
CB A:LYS135 4.3 8.9 1.0
ND2 A:ASN140 4.5 11.8 1.0
CA A:SER136 4.5 9.1 1.0
C A:SER136 4.8 9.7 1.0
DD22 A:ASN140 4.8 10.9 0.3
HD22 A:ASN140 4.8 10.9 0.7
O A:SER136 4.9 14.8 1.0
DG2 A:LYS135 5.0 11.2 1.0

Reference:

L.Li, S.Shukla, F.Meilleur, R.F.Standaert, J.Pierce, D.A.A.Myles, M.J.Cuneo. Neutron Crystallographic Studies of T4 Lysozyme at Cryogenic Temperature. Protein Sci. V. 26 2098 2017.
ISSN: ESSN 1469-896X
PubMed: 28707382
DOI: 10.1002/PRO.3231
Page generated: Sat Jul 12 09:57:56 2025

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