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Chlorine in PDB 5vsv: Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225

Enzymatic activity of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225

All present enzymatic activity of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225:
1.1.1.205;

Protein crystallography data

The structure of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225, PDB code: 5vsv was solved by N.Maltseva, Y.Kim, R.Mulligan, M.Makowska-Grzyska, M.Gu, D.R.Gollapalli, L.Hedstrom, A.Joachimiak, W.F.Anderson, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.13 / 2.21
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 62.861, 77.637, 78.972, 110.83, 104.05, 105.44
R / Rfree (%) 19.8 / 24.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225 (pdb code 5vsv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225, PDB code: 5vsv:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5vsv

Go back to Chlorine Binding Sites List in 5vsv
Chlorine binding site 1 out of 4 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:40.2
occ:1.00
 CL A:8KY502 0.0 40.2 1.0
C20 A:8KY502 1.8 37.2 1.0
C19 A:8KY502 2.7 35.9 1.0
C21 A:8KY502 2.8 35.5 1.0
O1 A:8KY502 2.9 35.2 1.0
O C:GLY439 3.4 29.1 1.0
C C:GLY439 3.5 27.3 1.0
CD2 A:HIS249 3.5 26.8 1.0
O A:HOH623 3.5 37.4 1.0
CB A:HIS249 3.6 24.7 1.0
O C:HOH637 3.8 38.6 1.0
CA C:GLY439 3.9 24.8 1.0
CG A:HIS249 3.9 26.4 1.0
N C:TYR440 3.9 26.2 1.0
C18 A:8KY502 4.1 34.5 1.0
C22 A:8KY502 4.1 34.8 1.0
CD C:PRO25 4.1 29.9 1.0
O C:VAL23 4.1 30.8 1.0
C28 A:8KY502 4.3 32.8 1.0
CG C:PRO25 4.4 27.5 1.0
CA C:TYR440 4.5 25.9 1.0
C17 A:8KY502 4.6 34.1 1.0
OG C:SER21 4.6 27.1 1.0
NE2 A:HIS249 4.8 27.6 1.0
O3 A:8KY502 4.8 29.3 1.0
CA C:LEU24 4.9 31.6 1.0
N C:PRO25 4.9 30.2 1.0

Chlorine binding site 2 out of 4 in 5vsv

Go back to Chlorine Binding Sites List in 5vsv
Chlorine binding site 2 out of 4 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:42.9
occ:1.00
 CL A:8KY503 0.0 42.9 1.0
C20 A:8KY503 1.8 38.6 1.0
C19 A:8KY503 2.7 38.1 1.0
C21 A:8KY503 2.8 35.8 1.0
O1 A:8KY503 2.9 41.1 1.0
O A:GLY439 3.2 44.5 1.0
C A:GLY439 3.4 43.3 1.0
O A:VAL23 3.7 46.7 1.0
CD2 B:HIS249 3.7 36.1 1.0
CA A:GLY439 3.8 42.6 1.0
CB B:HIS249 3.9 35.9 1.0
N A:TYR440 4.0 38.6 1.0
C18 A:8KY503 4.0 35.1 1.0
CD A:PRO25 4.1 49.0 1.0
C22 A:8KY503 4.1 33.9 1.0
CG B:HIS249 4.1 35.1 1.0
OG A:SER21 4.2 45.5 1.0
C28 A:8KY503 4.2 43.5 1.0
CA A:TYR440 4.5 38.5 1.0
CG A:PRO25 4.6 46.5 1.0
C17 A:8KY503 4.6 33.8 1.0
CA A:LEU24 4.6 45.6 1.0
C A:VAL23 4.8 46.8 1.0
CB A:SER21 4.8 44.3 1.0
N A:PRO25 4.8 58.0 1.0
NE2 B:HIS249 4.9 42.2 1.0

Chlorine binding site 3 out of 4 in 5vsv

Go back to Chlorine Binding Sites List in 5vsv
Chlorine binding site 3 out of 4 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl501

b:37.1
occ:1.00
 CL B:8KY501 0.0 37.1 1.0
C20 B:8KY501 1.8 33.4 1.0
C19 B:8KY501 2.7 32.1 1.0
C21 B:8KY501 2.8 31.6 1.0
O1 B:8KY501 2.9 33.8 1.0
C B:GLY439 3.4 28.4 1.0
O D:HOH653 3.5 40.6 1.0
O B:GLY439 3.5 29.2 1.0
CB D:HIS249 3.7 29.4 1.0
CD2 D:HIS249 3.7 31.1 1.0
N B:TYR440 3.7 26.8 1.0
CA B:GLY439 3.8 29.7 1.0
CG D:HIS249 4.0 30.3 1.0
CD B:PRO25 4.0 29.6 1.0
C18 B:8KY501 4.0 31.4 1.0
C22 B:8KY501 4.1 30.9 1.0
O B:VAL23 4.1 33.2 1.0
C28 B:8KY501 4.3 34.1 1.0
CG B:PRO25 4.3 28.0 1.0
CA B:TYR440 4.4 27.8 1.0
C17 B:8KY501 4.6 31.8 1.0
OG B:SER21 4.6 30.4 1.0
O3 B:8KY501 4.7 34.2 1.0
N B:PRO25 4.9 30.2 1.0
CA B:LEU24 4.9 31.7 1.0
NE2 D:HIS249 4.9 31.9 1.0

Chlorine binding site 4 out of 4 in 5vsv

Go back to Chlorine Binding Sites List in 5vsv
Chlorine binding site 4 out of 4 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl501

b:37.6
occ:1.00
 CL C:8KY501 0.0 37.6 1.0
C20 C:8KY501 1.8 33.7 1.0
C19 C:8KY501 2.7 31.0 1.0
C21 C:8KY501 2.8 33.2 1.0
O1 C:8KY501 3.0 29.4 1.0
CD2 C:HIS249 3.7 31.4 1.0
C D:GLY439 3.8 34.5 1.0
O D:GLY439 3.8 36.1 1.0
O D:VAL23 3.8 42.8 1.0
CB C:HIS249 3.9 29.4 1.0
CD D:PRO25 4.0 42.3 1.0
CA D:GLY439 4.0 31.9 1.0
C18 C:8KY501 4.0 29.9 1.0
C22 C:8KY501 4.1 31.8 1.0
CG C:HIS249 4.2 29.9 1.0
N D:TYR440 4.2 32.0 1.0
C28 C:8KY501 4.4 30.6 1.0
CG D:PRO25 4.5 38.2 1.0
C17 C:8KY501 4.6 30.8 1.0
CA D:LEU24 4.6 41.2 1.0
OG D:SER21 4.6 45.9 1.0
O3 C:8KY501 4.7 34.4 1.0
CA D:TYR440 4.8 31.5 1.0
N D:PRO25 4.8 43.6 1.0
CB D:SER21 4.9 43.9 1.0
C D:VAL23 4.9 42.0 1.0
NE2 C:HIS249 5.0 31.4 1.0

Reference:

N.Maltseva, Y.Kim, R.Mulligan, M.Makowska-Grzyska, M.Gu, D.R.Gollapalli, L.Hedstrom, A.Joachimiak, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P225 To Be Published.
Page generated: Sat Jul 12 10:02:03 2025

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