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Chlorine in PDB 5vwm: Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor

Enzymatic activity of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor

All present enzymatic activity of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor:
3.5.1.108;

Protein crystallography data

The structure of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor, PDB code: 5vwm was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.30 / 1.80
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 35.850, 47.590, 48.410, 111.30, 109.00, 98.39
R / Rfree (%) 13.8 / 17.9

Other elements in 5vwm:

The structure of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor also contains other interesting chemical elements:

Calcium (Ca) 1 atom
Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor (pdb code 5vwm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor, PDB code: 5vwm:

Chlorine binding site 1 out of 1 in 5vwm

Go back to Chlorine Binding Sites List in 5vwm
Chlorine binding site 1 out of 1 in the Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:17.8
occ:1.00
 N A:GLY263 3.2 12.5 1.0
N A:LEU266 3.3 5.8 1.0
O A:HOH546 3.4 31.2 1.0
CA A:GLY263 3.4 6.8 1.0
O A:HOH732 3.6 18.1 1.0
C A:GLY263 3.6 6.6 1.0
CB A:LEU266 3.7 5.7 1.0
CB A:ALA265 3.7 11.3 1.0
CE A:LYS142 3.8 16.5 1.0
O A:GLY263 3.8 5.6 1.0
N A:ALA265 3.9 6.6 1.0
CD A:LYS142 3.9 14.6 1.0
CA A:LEU266 4.1 5.4 1.0
CA A:ALA265 4.1 9.4 1.0
C A:ALA265 4.2 6.0 1.0
N A:HIS264 4.3 8.8 1.0
C A:SER262 4.4 14.6 1.0
O A:HOH780 4.8 12.4 0.4
CA A:SER262 4.8 10.3 1.0
C A:HIS264 4.8 7.5 1.0
O A:LYS261 4.9 13.5 1.0
O A:HOH829 4.9 30.7 1.0
O A:HOH833 5.0 33.5 1.0

Reference:

S.L.Delker, S.J.Mayclin, J.N.Phan, J.Abendroth, D.Lorimer, T.E.Edwards. Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir-090 Inhibitor To Be Published.
Page generated: Sat Jul 12 10:03:56 2025

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