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Chlorine in PDB 5vyr: Crystal Structure of the Wbkc Formyl Transferase From Brucella Melitensis

Enzymatic activity of Crystal Structure of the Wbkc Formyl Transferase From Brucella Melitensis

All present enzymatic activity of Crystal Structure of the Wbkc Formyl Transferase From Brucella Melitensis:
4.2.1.47;

Protein crystallography data

The structure of Crystal Structure of the Wbkc Formyl Transferase From Brucella Melitensis, PDB code: 5vyr was solved by A.S.Riegert, D.P.Chantigian, J.B.Thoden, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 65.875, 65.875, 233.140, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 23.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Wbkc Formyl Transferase From Brucella Melitensis (pdb code 5vyr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Wbkc Formyl Transferase From Brucella Melitensis, PDB code: 5vyr:

Chlorine binding site 1 out of 1 in 5vyr

Go back to Chlorine Binding Sites List in 5vyr
Chlorine binding site 1 out of 1 in the Crystal Structure of the Wbkc Formyl Transferase From Brucella Melitensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Wbkc Formyl Transferase From Brucella Melitensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:19.5
occ:1.00
OG1 A:THR131 3.0 14.0 1.0
N A:LEU110 3.1 13.8 1.0
O A:HOH475 3.1 23.6 1.0
CB A:LEU110 3.7 16.8 1.0
CA A:THR131 3.8 14.5 1.0
CD1 A:TYR114 3.8 17.7 1.0
CB A:SER109 3.8 15.7 1.0
CB A:THR131 3.9 12.9 1.0
CA A:LEU110 3.9 14.7 1.0
CA A:SER109 3.9 13.0 1.0
C A:SER109 4.0 12.3 1.0
CG A:LEU110 4.1 18.0 1.0
N A:GLY132 4.3 12.4 1.0
C A:THR131 4.3 13.9 1.0
CB A:ALA113 4.3 17.2 1.0
O A:LEU110 4.3 14.8 1.0
CD1 A:LEU110 4.4 19.6 1.0
CE1 A:TYR114 4.4 17.4 1.0
C A:LEU110 4.5 14.7 1.0
CG2 A:VAL123 4.6 18.4 1.0
CG A:TYR114 4.6 16.4 1.0
O A:GLU130 4.6 15.1 1.0
OG A:SER109 4.7 14.5 1.0
CB A:TYR114 4.7 15.5 1.0
O A:ALA113 4.7 15.3 1.0
N A:THR131 5.0 14.1 1.0
O A:GLY132 5.0 12.8 1.0

Reference:

A.S.Riegert, D.P.Chantigian, J.B.Thoden, P.A.Tipton, H.M.Holden. Biochemical Characterization of Wbkc, An N-Formyltransferase From Brucella Melitensis. Biochemistry V. 56 3657 2017.
ISSN: ISSN 1520-4995
PubMed: 28636341
DOI: 10.1021/ACS.BIOCHEM.7B00494
Page generated: Sat Jul 12 10:04:20 2025

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