Chlorine in PDB 5w16: Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate
Enzymatic activity of Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate
All present enzymatic activity of Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate:
5.1.1.3;
Protein crystallography data
The structure of Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate, PDB code: 5w16
was solved by
G.T.Cooling,
N.R.Vance,
M.A.Spies,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
58.93 /
1.91
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
81.677,
96.728,
179.066,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
18.5 /
22.5
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate
(pdb code 5w16). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the
Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate, PDB code: 5w16:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Chlorine binding site 1 out
of 8 in 5w16
Go back to
Chlorine Binding Sites List in 5w16
Chlorine binding site 1 out
of 8 in the Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl307
b:52.2
occ:1.00
|
H
|
A:GLN117
|
2.6
|
33.4
|
1.0
|
|
HG3
|
A:PRO138
|
3.0
|
45.1
|
1.0
|
|
O
|
A:HOH554
|
3.1
|
31.6
|
1.0
|
|
HB
|
A:THR116
|
3.1
|
32.9
|
1.0
|
|
HA
|
A:PRO138
|
3.1
|
43.9
|
1.0
|
|
HA
|
A:THR116
|
3.2
|
29.2
|
1.0
|
|
N
|
A:GLN117
|
3.4
|
27.8
|
1.0
|
|
HB3
|
A:PRO138
|
3.4
|
44.2
|
1.0
|
|
O
|
A:HOH559
|
3.6
|
39.8
|
1.0
|
|
HB3
|
A:GLN117
|
3.6
|
40.5
|
1.0
|
|
HB2
|
A:GLN117
|
3.7
|
40.5
|
1.0
|
|
HA3
|
A:GLY45
|
3.7
|
31.9
|
1.0
|
|
HG22
|
A:THR116
|
3.8
|
33.9
|
1.0
|
|
O
|
A:HOH622
|
3.8
|
51.4
|
1.0
|
|
CB
|
A:THR116
|
3.8
|
27.4
|
1.0
|
|
CG
|
A:PRO138
|
3.8
|
37.6
|
1.0
|
|
CA
|
A:THR116
|
3.9
|
24.3
|
1.0
|
|
CB
|
A:PRO138
|
3.9
|
36.8
|
1.0
|
|
CA
|
A:PRO138
|
3.9
|
36.6
|
1.0
|
|
CB
|
A:GLN117
|
4.0
|
33.8
|
1.0
|
|
C
|
A:THR116
|
4.2
|
25.2
|
1.0
|
|
C
|
A:GLY45
|
4.2
|
28.4
|
1.0
|
|
O
|
A:HOH461
|
4.3
|
30.6
|
1.0
|
|
CG2
|
A:THR116
|
4.3
|
28.2
|
1.0
|
|
O
|
A:GLY45
|
4.3
|
34.4
|
1.0
|
|
CA
|
A:GLN117
|
4.4
|
30.6
|
1.0
|
|
CA
|
A:GLY45
|
4.5
|
26.6
|
1.0
|
|
HG2
|
A:PRO138
|
4.5
|
45.1
|
1.0
|
|
N
|
A:PRO138
|
4.6
|
34.3
|
1.0
|
|
O
|
A:HOH483
|
4.6
|
43.4
|
1.0
|
|
N
|
A:GLY46
|
4.6
|
30.6
|
1.0
|
|
HG21
|
A:THR116
|
4.6
|
33.9
|
1.0
|
|
HB1
|
A:ALA136
|
4.6
|
36.1
|
1.0
|
|
CD
|
A:PRO138
|
4.7
|
34.5
|
1.0
|
|
HD3
|
A:PRO138
|
4.7
|
41.5
|
1.0
|
|
H
|
A:ALA118
|
4.8
|
31.0
|
1.0
|
|
H
|
A:GLY46
|
4.8
|
36.8
|
1.0
|
|
HB2
|
A:PRO138
|
4.9
|
44.2
|
1.0
|
|
HA2
|
A:GLY46
|
4.9
|
36.5
|
1.0
|
|
HA
|
A:GLN117
|
5.0
|
36.7
|
1.0
|
|
HA2
|
A:GLY45
|
5.0
|
31.9
|
1.0
|
|
Chlorine binding site 2 out
of 8 in 5w16
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Chlorine Binding Sites List in 5w16
Chlorine binding site 2 out
of 8 in the Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl304
b:55.7
occ:1.00
|
H
|
B:GLN117
|
2.4
|
33.9
|
1.0
|
|
O
|
B:HOH559
|
3.0
|
32.3
|
1.0
|
|
HB
|
B:THR116
|
3.0
|
33.0
|
1.0
|
|
HA
|
B:THR116
|
3.1
|
26.6
|
1.0
|
|
HG3
|
B:PRO138
|
3.1
|
45.5
|
1.0
|
|
HA
|
B:PRO138
|
3.2
|
41.0
|
1.0
|
|
N
|
B:GLN117
|
3.2
|
28.2
|
1.0
|
|
HB3
|
B:PRO138
|
3.4
|
36.2
|
1.0
|
|
HB3
|
B:GLN117
|
3.4
|
41.6
|
1.0
|
|
HB2
|
B:GLN117
|
3.5
|
41.6
|
1.0
|
|
O
|
B:HOH549
|
3.6
|
47.9
|
1.0
|
|
CB
|
B:THR116
|
3.7
|
27.5
|
1.0
|
|
CA
|
B:THR116
|
3.7
|
22.2
|
1.0
|
|
HA3
|
B:GLY45
|
3.7
|
31.0
|
1.0
|
|
HG22
|
B:THR116
|
3.7
|
27.7
|
1.0
|
|
O
|
B:HOH618
|
3.8
|
46.2
|
1.0
|
|
CB
|
B:GLN117
|
3.9
|
34.6
|
1.0
|
|
CG
|
B:PRO138
|
3.9
|
37.9
|
1.0
|
|
CB
|
B:PRO138
|
3.9
|
30.2
|
1.0
|
|
CA
|
B:PRO138
|
3.9
|
34.2
|
1.0
|
|
C
|
B:THR116
|
4.0
|
26.6
|
1.0
|
|
O
|
B:GLY45
|
4.1
|
27.6
|
1.0
|
|
CA
|
B:GLN117
|
4.2
|
26.9
|
1.0
|
|
C
|
B:GLY45
|
4.2
|
24.8
|
1.0
|
|
CG2
|
B:THR116
|
4.2
|
23.1
|
1.0
|
|
CA
|
B:GLY45
|
4.4
|
25.9
|
1.0
|
|
HB1
|
B:ALA136
|
4.5
|
42.9
|
1.0
|
|
O
|
B:HOH454
|
4.5
|
29.9
|
1.0
|
|
HG2
|
B:PRO138
|
4.6
|
45.5
|
1.0
|
|
HG21
|
B:THR116
|
4.6
|
27.7
|
1.0
|
|
N
|
B:PRO138
|
4.6
|
33.5
|
1.0
|
|
HD3
|
B:PRO138
|
4.6
|
41.2
|
1.0
|
|
H
|
B:ALA118
|
4.6
|
32.1
|
1.0
|
|
CD
|
B:PRO138
|
4.7
|
34.4
|
1.0
|
|
N
|
B:GLY46
|
4.7
|
28.0
|
1.0
|
|
HA
|
B:GLN117
|
4.7
|
32.2
|
1.0
|
|
HA2
|
B:GLY46
|
4.8
|
30.6
|
1.0
|
|
HB2
|
B:PRO138
|
4.8
|
36.2
|
1.0
|
|
HA2
|
B:GLY45
|
4.9
|
31.0
|
1.0
|
|
OG1
|
B:THR116
|
4.9
|
24.0
|
1.0
|
|
O
|
A:HOH621
|
4.9
|
47.2
|
1.0
|
|
O
|
B:HOH446
|
5.0
|
46.0
|
1.0
|
|
Chlorine binding site 3 out
of 8 in 5w16
Go back to
Chlorine Binding Sites List in 5w16
Chlorine binding site 3 out
of 8 in the Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl305
b:78.4
occ:1.00
|
H
|
B:ALA248
|
2.9
|
74.3
|
1.0
|
|
HD2
|
B:HIS226
|
3.1
|
34.6
|
1.0
|
|
H
|
B:GLU247
|
3.2
|
63.5
|
1.0
|
|
O
|
B:THR224
|
3.4
|
36.0
|
1.0
|
|
HB3
|
B:ALA248
|
3.5
|
86.9
|
1.0
|
|
O
|
B:HOH481
|
3.5
|
47.2
|
1.0
|
|
HB2
|
B:GLU247
|
3.6
|
77.1
|
1.0
|
|
O
|
B:HOH543
|
3.7
|
47.0
|
1.0
|
|
N
|
B:ALA248
|
3.8
|
62.0
|
1.0
|
|
CD2
|
B:HIS226
|
3.8
|
28.9
|
1.0
|
|
HB
|
B:THR224
|
3.8
|
44.0
|
1.0
|
|
NE2
|
B:HIS226
|
4.0
|
32.6
|
1.0
|
|
N
|
B:GLU247
|
4.1
|
53.0
|
1.0
|
|
CB
|
B:ALA248
|
4.2
|
72.4
|
1.0
|
|
O
|
B:HOH518
|
4.3
|
59.8
|
1.0
|
|
HA
|
B:VAL246
|
4.3
|
53.6
|
1.0
|
|
HB2
|
B:ALA248
|
4.3
|
86.9
|
1.0
|
|
C
|
B:THR224
|
4.3
|
36.8
|
1.0
|
|
HG22
|
B:THR224
|
4.3
|
43.5
|
1.0
|
|
CB
|
B:GLU247
|
4.5
|
64.2
|
1.0
|
|
O
|
B:ALA248
|
4.5
|
49.5
|
1.0
|
|
HG13
|
B:VAL246
|
4.5
|
56.2
|
1.0
|
|
CA
|
B:ALA248
|
4.5
|
72.8
|
1.0
|
|
CB
|
B:THR224
|
4.6
|
36.6
|
1.0
|
|
H
|
B:THR224
|
4.6
|
41.0
|
1.0
|
|
CA
|
B:GLU247
|
4.6
|
54.7
|
1.0
|
|
HA
|
B:PHE225
|
4.7
|
41.6
|
1.0
|
|
C
|
B:GLU247
|
4.7
|
61.1
|
1.0
|
|
CG2
|
B:THR224
|
4.9
|
36.3
|
1.0
|
|
CA
|
B:THR224
|
4.9
|
37.4
|
1.0
|
|
C
|
B:ALA248
|
5.0
|
56.3
|
1.0
|
|
HG2
|
B:GLU247
|
5.0
|
75.0
|
1.0
|
|
Chlorine binding site 4 out
of 8 in 5w16
Go back to
Chlorine Binding Sites List in 5w16
Chlorine binding site 4 out
of 8 in the Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl307
b:50.0
occ:1.00
|
H
|
C:GLN117
|
2.3
|
33.0
|
1.0
|
|
HA
|
C:THR116
|
3.0
|
29.7
|
1.0
|
|
HB
|
C:THR116
|
3.0
|
32.3
|
1.0
|
|
O
|
C:HOH563
|
3.1
|
30.7
|
1.0
|
|
HG3
|
C:PRO138
|
3.1
|
41.7
|
1.0
|
|
N
|
C:GLN117
|
3.2
|
27.5
|
1.0
|
|
HA
|
C:PRO138
|
3.2
|
35.6
|
1.0
|
|
HB3
|
C:GLN117
|
3.4
|
39.8
|
1.0
|
|
O
|
C:HOH618
|
3.5
|
48.2
|
1.0
|
|
HB3
|
C:PRO138
|
3.5
|
37.4
|
1.0
|
|
HB2
|
C:GLN117
|
3.6
|
39.8
|
1.0
|
|
CA
|
C:THR116
|
3.6
|
24.7
|
1.0
|
|
HG22
|
C:THR116
|
3.6
|
31.1
|
1.0
|
|
O
|
C:HOH542
|
3.7
|
42.4
|
1.0
|
|
HA3
|
C:GLY45
|
3.7
|
28.9
|
1.0
|
|
CB
|
C:THR116
|
3.7
|
26.9
|
1.0
|
|
CB
|
C:GLN117
|
3.9
|
33.1
|
1.0
|
|
CG
|
C:PRO138
|
3.9
|
34.7
|
1.0
|
|
C
|
C:THR116
|
3.9
|
28.0
|
1.0
|
|
CA
|
C:PRO138
|
4.0
|
29.7
|
1.0
|
|
CB
|
C:PRO138
|
4.0
|
31.2
|
1.0
|
|
O
|
C:GLY45
|
4.1
|
29.6
|
1.0
|
|
CG2
|
C:THR116
|
4.2
|
25.9
|
1.0
|
|
CA
|
C:GLN117
|
4.2
|
30.3
|
1.0
|
|
C
|
C:GLY45
|
4.2
|
27.2
|
1.0
|
|
CA
|
C:GLY45
|
4.4
|
24.1
|
1.0
|
|
O
|
C:HOH424
|
4.4
|
32.0
|
1.0
|
|
HB1
|
C:ALA136
|
4.5
|
34.3
|
1.0
|
|
HG21
|
C:THR116
|
4.6
|
31.1
|
1.0
|
|
H
|
C:ALA118
|
4.6
|
33.9
|
1.0
|
|
HD3
|
C:PRO138
|
4.6
|
39.3
|
1.0
|
|
N
|
C:PRO138
|
4.6
|
30.7
|
1.0
|
|
HG2
|
C:PRO138
|
4.6
|
41.7
|
1.0
|
|
CD
|
C:PRO138
|
4.7
|
32.8
|
1.0
|
|
N
|
C:GLY46
|
4.7
|
32.6
|
1.0
|
|
HA
|
C:GLN117
|
4.7
|
36.3
|
1.0
|
|
HA2
|
C:GLY45
|
4.8
|
28.9
|
1.0
|
|
HB2
|
C:PRO138
|
4.9
|
37.4
|
1.0
|
|
OG1
|
C:THR116
|
4.9
|
25.6
|
1.0
|
|
HA2
|
C:GLY46
|
4.9
|
36.8
|
1.0
|
|
HG23
|
C:THR116
|
5.0
|
31.1
|
1.0
|
|
N
|
C:THR116
|
5.0
|
28.1
|
1.0
|
|
Chlorine binding site 5 out
of 8 in 5w16
Go back to
Chlorine Binding Sites List in 5w16
Chlorine binding site 5 out
of 8 in the Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl308
b:58.2
occ:1.00
|
HG23
|
C:VAL153
|
2.2
|
57.8
|
1.0
|
|
H
|
C:VAL153
|
2.9
|
38.8
|
1.0
|
|
HG22
|
C:VAL153
|
2.9
|
57.8
|
1.0
|
|
CG2
|
C:VAL153
|
3.0
|
48.2
|
1.0
|
|
HD2
|
C:PRO152
|
3.0
|
49.1
|
1.0
|
|
HB2
|
C:PRO152
|
3.1
|
42.8
|
1.0
|
|
HB3
|
C:ASP151
|
3.3
|
48.5
|
1.0
|
|
HG21
|
C:VAL153
|
3.4
|
57.8
|
1.0
|
|
HB3
|
D:LEU156
|
3.4
|
40.8
|
1.0
|
|
O
|
D:HOH518
|
3.4
|
40.7
|
1.0
|
|
N
|
C:VAL153
|
3.6
|
32.3
|
1.0
|
|
HD22
|
D:LEU156
|
3.7
|
42.5
|
1.0
|
|
HD13
|
D:LEU156
|
3.8
|
48.3
|
1.0
|
|
CD
|
C:PRO152
|
3.8
|
40.9
|
1.0
|
|
CB
|
C:PRO152
|
3.9
|
35.7
|
1.0
|
|
HG2
|
C:PRO152
|
4.0
|
44.1
|
1.0
|
|
N
|
C:PRO152
|
4.1
|
35.9
|
1.0
|
|
CB
|
C:VAL153
|
4.1
|
44.6
|
1.0
|
|
CG
|
C:PRO152
|
4.2
|
36.8
|
1.0
|
|
CB
|
C:ASP151
|
4.2
|
40.4
|
1.0
|
|
CB
|
D:LEU156
|
4.4
|
34.0
|
1.0
|
|
CA
|
C:VAL153
|
4.4
|
36.0
|
1.0
|
|
CA
|
C:PRO152
|
4.4
|
36.0
|
1.0
|
|
C
|
C:PRO152
|
4.4
|
37.1
|
1.0
|
|
HB
|
C:VAL153
|
4.5
|
53.5
|
1.0
|
|
CD2
|
D:LEU156
|
4.6
|
35.4
|
1.0
|
|
HB2
|
C:ASP151
|
4.6
|
48.5
|
1.0
|
|
OD2
|
C:ASP151
|
4.6
|
64.0
|
1.0
|
|
HA
|
C:VAL153
|
4.6
|
43.2
|
1.0
|
|
HD3
|
C:PRO152
|
4.6
|
49.1
|
1.0
|
|
CD1
|
D:LEU156
|
4.7
|
40.2
|
1.0
|
|
HB3
|
C:PRO152
|
4.7
|
42.8
|
1.0
|
|
HB2
|
D:LEU156
|
4.7
|
40.8
|
1.0
|
|
CG
|
D:LEU156
|
4.8
|
40.0
|
1.0
|
|
C
|
C:ASP151
|
4.8
|
38.3
|
1.0
|
|
CG
|
C:ASP151
|
4.9
|
53.0
|
1.0
|
|
Chlorine binding site 6 out
of 8 in 5w16
Go back to
Chlorine Binding Sites List in 5w16
Chlorine binding site 6 out
of 8 in the Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl309
b:73.0
occ:1.00
|
H
|
C:ASP130
|
2.3
|
56.4
|
1.0
|
|
O
|
C:HOH502
|
2.8
|
66.0
|
1.0
|
|
HA
|
C:VAL129
|
3.1
|
47.1
|
1.0
|
|
HG23
|
C:VAL129
|
3.1
|
58.6
|
1.0
|
|
N
|
C:ASP130
|
3.2
|
47.0
|
1.0
|
|
HG2
|
C:ARG106
|
3.2
|
61.8
|
1.0
|
|
HB2
|
C:ASP130
|
3.2
|
63.3
|
1.0
|
|
OD2
|
C:ASP130
|
3.4
|
64.5
|
1.0
|
|
O
|
C:HOH517
|
3.6
|
57.4
|
1.0
|
|
CG
|
C:ASP130
|
3.7
|
59.6
|
1.0
|
|
HG22
|
C:VAL129
|
3.8
|
58.6
|
1.0
|
|
CB
|
C:ASP130
|
3.8
|
52.8
|
1.0
|
|
CG2
|
C:VAL129
|
3.8
|
48.9
|
1.0
|
|
CA
|
C:VAL129
|
3.9
|
39.3
|
1.0
|
|
C
|
C:VAL129
|
4.0
|
45.4
|
1.0
|
|
CA
|
C:ASP130
|
4.1
|
48.2
|
1.0
|
|
CG
|
C:ARG106
|
4.1
|
51.5
|
1.0
|
|
HA
|
C:ARG106
|
4.1
|
61.0
|
1.0
|
|
HD3
|
C:ARG106
|
4.2
|
57.4
|
1.0
|
|
HD2
|
C:ARG106
|
4.2
|
57.4
|
1.0
|
|
CD
|
C:ARG106
|
4.4
|
47.9
|
1.0
|
|
CB
|
C:VAL129
|
4.5
|
45.8
|
1.0
|
|
OD1
|
C:ASP130
|
4.6
|
54.2
|
1.0
|
|
HG21
|
C:VAL129
|
4.6
|
58.6
|
1.0
|
|
HB3
|
C:ASP130
|
4.7
|
63.3
|
1.0
|
|
HB3
|
C:ARG106
|
4.7
|
58.0
|
1.0
|
|
O
|
C:ASP130
|
4.7
|
41.7
|
1.0
|
|
HG3
|
C:ARG106
|
4.7
|
61.8
|
1.0
|
|
HA
|
C:ASP130
|
4.8
|
57.9
|
1.0
|
|
CB
|
C:ARG106
|
4.8
|
48.3
|
1.0
|
|
HB
|
C:VAL129
|
4.8
|
54.9
|
1.0
|
|
CA
|
C:ARG106
|
4.9
|
50.8
|
1.0
|
|
C
|
C:ASP130
|
4.9
|
45.9
|
1.0
|
|
Chlorine binding site 7 out
of 8 in 5w16
Go back to
Chlorine Binding Sites List in 5w16
Chlorine binding site 7 out
of 8 in the Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl306
b:49.7
occ:1.00
|
H
|
D:GLN117
|
2.4
|
33.4
|
1.0
|
|
HB
|
D:THR116
|
3.0
|
32.1
|
1.0
|
|
HA
|
D:THR116
|
3.0
|
32.5
|
1.0
|
|
O
|
D:HOH558
|
3.0
|
31.6
|
1.0
|
|
HA
|
D:PRO138
|
3.2
|
39.6
|
1.0
|
|
HG3
|
D:PRO138
|
3.2
|
44.6
|
1.0
|
|
N
|
D:GLN117
|
3.2
|
27.8
|
1.0
|
|
HB2
|
D:GLN117
|
3.3
|
36.3
|
1.0
|
|
HB3
|
D:PRO138
|
3.4
|
35.7
|
1.0
|
|
O
|
D:HOH566
|
3.4
|
40.4
|
1.0
|
|
HG22
|
D:THR116
|
3.6
|
28.1
|
1.0
|
|
CB
|
D:THR116
|
3.6
|
26.7
|
1.0
|
|
CA
|
D:THR116
|
3.6
|
27.1
|
1.0
|
|
O
|
D:HOH617
|
3.7
|
51.9
|
1.0
|
|
HA3
|
D:GLY45
|
3.7
|
31.5
|
1.0
|
|
CB
|
D:PRO138
|
3.9
|
29.7
|
1.0
|
|
C
|
D:THR116
|
4.0
|
27.1
|
1.0
|
|
CA
|
D:PRO138
|
4.0
|
33.0
|
1.0
|
|
CG
|
D:PRO138
|
4.0
|
37.1
|
1.0
|
|
CB
|
D:GLN117
|
4.0
|
30.2
|
1.0
|
|
CG2
|
D:THR116
|
4.1
|
23.4
|
1.0
|
|
O
|
D:GLY45
|
4.1
|
29.7
|
1.0
|
|
HB3
|
D:GLN117
|
4.1
|
36.3
|
1.0
|
|
C
|
D:GLY45
|
4.2
|
25.3
|
1.0
|
|
O
|
D:HOH454
|
4.2
|
30.3
|
1.0
|
|
CA
|
D:GLN117
|
4.3
|
27.9
|
1.0
|
|
CA
|
D:GLY45
|
4.4
|
26.3
|
1.0
|
|
HG21
|
D:THR116
|
4.5
|
28.1
|
1.0
|
|
HG2
|
D:PRO138
|
4.7
|
44.6
|
1.0
|
|
N
|
D:GLY46
|
4.7
|
30.5
|
1.0
|
|
N
|
D:PRO138
|
4.7
|
32.9
|
1.0
|
|
HB1
|
D:ALA136
|
4.7
|
39.9
|
1.0
|
|
H
|
D:ALA118
|
4.7
|
36.6
|
1.0
|
|
HA
|
D:GLN117
|
4.8
|
33.5
|
1.0
|
|
O
|
D:HOH442
|
4.8
|
42.3
|
1.0
|
|
HB2
|
D:PRO138
|
4.8
|
35.7
|
1.0
|
|
HA2
|
D:GLY45
|
4.9
|
31.5
|
1.0
|
|
CD
|
D:PRO138
|
4.9
|
32.4
|
1.0
|
|
HG23
|
D:THR116
|
4.9
|
28.1
|
1.0
|
|
OG1
|
D:THR116
|
4.9
|
25.8
|
1.0
|
|
HA2
|
D:GLY46
|
4.9
|
32.4
|
1.0
|
|
HD3
|
D:PRO138
|
5.0
|
38.8
|
1.0
|
|
H
|
D:GLY46
|
5.0
|
36.6
|
1.0
|
|
N
|
D:THR116
|
5.0
|
28.6
|
1.0
|
|
Chlorine binding site 8 out
of 8 in 5w16
Go back to
Chlorine Binding Sites List in 5w16
Chlorine binding site 8 out
of 8 in the Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl307
b:75.8
occ:1.00
|
HE
|
D:ARG54
|
2.4
|
46.8
|
1.0
|
|
HH21
|
D:ARG54
|
3.0
|
45.6
|
1.0
|
|
HE1
|
D:PHE55
|
3.1
|
30.5
|
1.0
|
|
NE
|
D:ARG54
|
3.3
|
39.0
|
1.0
|
|
HG3
|
D:MET51
|
3.4
|
31.4
|
1.0
|
|
HB2
|
D:ARG54
|
3.6
|
34.5
|
1.0
|
|
NH2
|
D:ARG54
|
3.7
|
38.0
|
1.0
|
|
CE1
|
D:PHE55
|
3.9
|
25.4
|
1.0
|
|
HD1
|
D:PHE55
|
3.9
|
30.6
|
1.0
|
|
CZ
|
D:ARG54
|
3.9
|
44.2
|
1.0
|
|
HB3
|
D:ARG54
|
4.0
|
34.5
|
1.0
|
|
O
|
A:GLU255
|
4.1
|
61.5
|
1.0
|
|
HD2
|
D:ARG54
|
4.2
|
48.6
|
1.0
|
|
CB
|
D:ARG54
|
4.2
|
28.8
|
1.0
|
|
HA
|
D:MET51
|
4.3
|
30.5
|
1.0
|
|
CD1
|
D:PHE55
|
4.3
|
25.5
|
1.0
|
|
CD
|
D:ARG54
|
4.3
|
40.5
|
1.0
|
|
CG
|
D:MET51
|
4.3
|
26.1
|
1.0
|
|
HG2
|
D:MET51
|
4.4
|
31.4
|
1.0
|
|
HH22
|
D:ARG54
|
4.4
|
45.6
|
1.0
|
|
O
|
D:MET51
|
4.6
|
26.7
|
1.0
|
|
CG
|
D:ARG54
|
4.9
|
36.4
|
1.0
|
|
CZ
|
D:PHE55
|
4.9
|
29.7
|
1.0
|
|
HE2
|
D:MET51
|
4.9
|
40.2
|
1.0
|
|
HA
|
A:GLU255
|
5.0
|
79.4
|
1.0
|
|
Reference:
G.T.Cooling,
N.R.Vance,
M.A.Spies.
Crystal Structure of Glutamate Racemase From Thermus Thermophilus in Complex with D-Glutamate To Be Published.
Page generated: Sat Jul 12 10:05:28 2025
|
