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Chlorine in PDB 5wbv: Crystal Structure of the Set Domain of Human SUV420H1 in Complex with Inhibitor

Enzymatic activity of Crystal Structure of the Set Domain of Human SUV420H1 in Complex with Inhibitor

All present enzymatic activity of Crystal Structure of the Set Domain of Human SUV420H1 in Complex with Inhibitor:
2.1.1.43;

Protein crystallography data

The structure of Crystal Structure of the Set Domain of Human SUV420H1 in Complex with Inhibitor, PDB code: 5wbv was solved by L.Halabelian, W.Tempel, P.J.Brown, C.Bountra, A.M.Edwards, C.H.Arrowsmith, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.00 / 2.30
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 46.324, 50.559, 74.818, 101.26, 107.51, 89.67
R / Rfree (%) 23.4 / 26.9

Other elements in 5wbv:

The structure of Crystal Structure of the Set Domain of Human SUV420H1 in Complex with Inhibitor also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Set Domain of Human SUV420H1 in Complex with Inhibitor (pdb code 5wbv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Set Domain of Human SUV420H1 in Complex with Inhibitor, PDB code: 5wbv:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5wbv

Go back to Chlorine Binding Sites List in 5wbv
Chlorine binding site 1 out of 2 in the Crystal Structure of the Set Domain of Human SUV420H1 in Complex with Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Set Domain of Human SUV420H1 in Complex with Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:55.4
occ:1.00
CL A:9ZY403 0.0 55.4 1.0
C10 A:9ZY403 1.7 47.0 1.0
C11 A:9ZY403 2.7 42.8 1.0
C9 A:9ZY403 2.7 44.6 1.0
C13 A:9ZY403 3.1 48.6 1.0
O B:HIS245 3.3 45.4 1.0
O B:HOH509 3.3 30.9 1.0
O2 A:9ZY403 3.5 51.2 1.0
N B:HIS245 3.6 46.4 1.0
CB B:HIS245 3.7 50.2 1.0
O3 A:9ZY403 3.7 50.1 1.0
CA B:HIS245 3.9 46.8 1.0
C12 A:9ZY403 4.0 42.0 1.0
C8 A:9ZY403 4.0 40.0 1.0
C B:HIS245 4.0 46.4 1.0
O A:PHE281 4.2 48.1 1.0
C B:ARG244 4.2 45.6 1.0
CA B:ARG244 4.5 40.3 1.0
C7 A:9ZY403 4.5 38.3 1.0
CG B:HIS245 4.5 54.9 1.0
N A:SER283 4.6 40.7 1.0
ND1 B:HIS245 4.7 58.1 1.0
CB B:ARG244 4.8 40.8 1.0
C A:PHE281 4.8 45.9 1.0
CB A:SER283 4.9 43.1 1.0

Chlorine binding site 2 out of 2 in 5wbv

Go back to Chlorine Binding Sites List in 5wbv
Chlorine binding site 2 out of 2 in the Crystal Structure of the Set Domain of Human SUV420H1 in Complex with Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Set Domain of Human SUV420H1 in Complex with Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:53.4
occ:1.00
CL B:9ZY403 0.0 53.4 1.0
C10 B:9ZY403 1.7 44.6 1.0
C11 B:9ZY403 2.7 42.0 1.0
C9 B:9ZY403 2.7 42.9 1.0
C13 B:9ZY403 3.1 47.2 1.0
O3 B:9ZY403 3.5 51.0 1.0
O2 B:9ZY403 3.7 47.4 1.0
C12 B:9ZY403 4.0 39.3 1.0
C8 B:9ZY403 4.0 42.4 1.0
O B:PHE281 4.2 51.1 1.0
UNK B:UNX404 4.3 34.9 1.0
C7 B:9ZY403 4.5 39.0 1.0
N B:SER283 4.6 48.7 1.0
C B:PHE281 4.9 51.5 1.0
CB B:SER283 4.9 52.4 1.0

Reference:

L.Halabelian, W.Tempel, P.J.Brown, C.Bountra, A.M.Edwards, C.H.Arrowsmith, Structural Genomics Consortium (Sgc). Crystal Structure of the Set Domain of Human SUV420H1 in Complex with Inhibitor To Be Published.
Page generated: Sat Jul 12 10:12:31 2025

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