Chlorine in PDB 5wlg: Crystal Structure of H-2DB with the GAP501 Peptide (Sql)

The structure of Crystal Structure of H-2DB with the GAP501 Peptide (Sql), PDB code: 5wlg was solved by S.Gras, C.Farenc, T.Josephs, J.Rossjohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.05 / 2.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	115.735, 70.210, 116.488, 90.00, 108.28, 90.00
R / Rfree (%)	21.8 / 24.9

The structure of Crystal Structure of H-2DB with the GAP501 Peptide (Sql) also contains other interesting chemical elements:

Sodium

(Na)

3 atoms

The binding sites of Chlorine atom in the Crystal Structure of H-2DB with the GAP501 Peptide (Sql) (pdb code 5wlg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of H-2DB with the GAP501 Peptide (Sql), PDB code: 5wlg:

Chlorine binding site 1 out of 1 in the Crystal Structure of H-2DB with the GAP501 Peptide (Sql)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of H-2DB with the GAP501 Peptide (Sql) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:67.5 occ:1.00 NA A:NA301 2.2 45.4 1.0 O B:HOH148 3.3 49.9 1.0 OD1 A:ASN30 3.8 63.0 1.0 CD2 A:TYR27 3.9 25.9 1.0 CG A:TYR27 4.1 25.2 1.0 CZ A:PHE8 4.1 20.0 1.0 CE2 A:TYR27 4.1 26.9 1.0 CA A:ASN30 4.1 32.7 1.0 O A:HOH600 4.2 55.2 1.0 CB A:ASN30 4.3 35.8 1.0 CD1 A:TYR27 4.4 26.4 1.0 CE2 A:PHE8 4.5 22.6 1.0 CG A:ASN30 4.5 63.1 1.0 CZ A:TYR27 4.5 31.0 1.0 O B:HOH103 4.5 39.1 1.0 O A:ASN30 4.5 35.1 1.0 CB A:TYR27 4.6 24.0 1.0 CE1 A:PHE8 4.6 20.9 1.0 CE1 A:TYR27 4.7 26.4 1.0 C A:ASN30 4.7 35.5 1.0 NZ B:LYS58 4.9 34.3 1.0 O A:HOH548 5.0 53.0 1.0

N.Van Braeckel-Budimir, S.Gras, K.Ladell, T.M.Josephs, L.Pewe, S.L.Urban, K.L.Miners, C.Farenc, D.A.Price, J.Rossjohn, J.T.Harty. A T Cell Receptor Locus Harbors A Malaria-Specific Immune Response Gene. Immunity V. 47 835 2017.
ISSN: ISSN 1074-7613
PubMed: 29150238
DOI: 10.1016/J.IMMUNI.2017.10.013