Atomistry » Chlorine » PDB 5xvu-5y7x » 5y1q
Atomistry »
  Chlorine »
    PDB 5xvu-5y7x »
      5y1q »

Chlorine in PDB 5y1q: Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(3-Chlorobenzyl)Ureido)-N-Hydroxy-4-Methylpentanamide

Protein crystallography data

The structure of Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(3-Chlorobenzyl)Ureido)-N-Hydroxy-4-Methylpentanamide, PDB code: 5y1q was solved by A.K.Marapaka, Y.Zhang, A.Addlagatta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.81 / 2.14
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 76.128, 109.609, 113.138, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 21.9

Other elements in 5y1q:

The structure of Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(3-Chlorobenzyl)Ureido)-N-Hydroxy-4-Methylpentanamide also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms
Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(3-Chlorobenzyl)Ureido)-N-Hydroxy-4-Methylpentanamide (pdb code 5y1q). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(3-Chlorobenzyl)Ureido)-N-Hydroxy-4-Methylpentanamide, PDB code: 5y1q:

Chlorine binding site 1 out of 1 in 5y1q

Go back to Chlorine Binding Sites List in 5y1q
Chlorine binding site 1 out of 1 in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(3-Chlorobenzyl)Ureido)-N-Hydroxy-4-Methylpentanamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(3-Chlorobenzyl)Ureido)-N-Hydroxy-4-Methylpentanamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1105

b:63.8
occ:1.00
CL1 A:8L01105 0.0 63.8 1.0
CD1 A:8L01105 1.8 65.8 1.0
C14 A:8L01105 2.7 60.8 1.0
CG1 A:8L01105 2.8 57.1 1.0
CZ A:ARG997 3.9 28.6 1.0
C13 A:8L01105 4.0 60.4 1.0
NH1 A:ARG997 4.0 30.3 1.0
C A:VAL459 4.1 27.1 1.0
NE A:ARG997 4.1 27.6 1.0
CB A:8L01105 4.1 52.6 1.0
NH2 A:ARG997 4.1 28.8 1.0
O A:VAL459 4.1 27.9 1.0
O A:HOH1414 4.2 24.1 1.0
CA A:VAL459 4.2 27.2 1.0
NH1 A:ARG489 4.5 19.0 0.5
N A:GLY460 4.5 21.9 1.0
CG2 A:8L01105 4.5 56.1 1.0
O A:ASN458 4.5 25.7 1.0
CD A:ARG997 4.6 23.1 1.0
ND2 A:ASN471 4.8 23.0 1.0
CA A:GLY460 5.0 21.1 1.0

Reference:

A.K.Marapaka, A.Addlagatta. Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(3-Chlorobenzyl)Ureido) -N-Hydroxy-4-Methylpentanamide To Be Published.
Page generated: Sat Jul 12 10:50:21 2025

Last articles

Mg in 4JI1
Mg in 4JI0
Mg in 4JI2
Mg in 4JI3
Mg in 4JHD
Mg in 4JH6
Mg in 4JH8
Mg in 4JH7
Mg in 4JH3
Mg in 4JH5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy