Atomistry » Chlorine » PDB 5yke-5z30 » 5ypd
Atomistry »
  Chlorine »
    PDB 5yke-5z30 »
      5ypd »

Chlorine in PDB 5ypd: Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant) in Complex with Methionine

Enzymatic activity of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant) in Complex with Methionine

All present enzymatic activity of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant) in Complex with Methionine:
3.4.11.18;

Protein crystallography data

The structure of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant) in Complex with Methionine, PDB code: 5ypd was solved by C.B.Sandeep, A.Addlagatta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.57 / 1.62
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.226, 44.909, 57.295, 90.00, 94.17, 90.00
R / Rfree (%) 14.4 / 18.2

Other elements in 5ypd:

The structure of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant) in Complex with Methionine also contains other interesting chemical elements:

Cobalt (Co) 2 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant) in Complex with Methionine (pdb code 5ypd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant) in Complex with Methionine, PDB code: 5ypd:

Chlorine binding site 1 out of 1 in 5ypd

Go back to Chlorine Binding Sites List in 5ypd
Chlorine binding site 1 out of 1 in the Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant) in Complex with Methionine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant) in Complex with Methionine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:50.8
occ:1.00
 O A:HOH430 2.8 40.4 1.0
N A:ARG200 3.1 25.3 1.0
N A:ASP201 3.3 25.4 1.0
CA A:ARG200 3.8 26.6 1.0
CB A:ARG200 3.8 29.3 1.0
OD1 A:ASP201 3.9 35.4 1.0
CG A:ASP201 3.9 34.3 1.0
C A:ARG200 4.0 26.5 1.0
CG1 A:VAL199 4.1 25.8 1.0
CD1 A:LEU246 4.1 36.8 1.0
CB A:ASP201 4.1 29.6 1.0
C A:VAL199 4.1 26.5 1.0
CB A:LEU246 4.1 36.2 1.0
CA A:VAL199 4.1 25.2 1.0
CE1 A:TYR248 4.2 34.7 1.0
O A:LEU246 4.3 36.2 1.0
CA A:ASP201 4.3 26.1 1.0
OD2 A:ASP201 4.4 35.3 1.0
CD1 A:TYR248 4.4 32.6 1.0
CG A:ARG200 4.5 30.5 1.0
CG A:LEU246 4.6 36.7 1.0
CB A:VAL199 4.6 23.6 1.0
CD A:ARG200 4.8 39.3 1.0
CD2 A:LEU246 4.9 33.5 1.0
C A:LEU246 4.9 33.4 1.0
CA A:LEU246 5.0 31.2 1.0

Reference:

C.B.Sandeep, A.Addlagatta. Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant) in Complex with Methionine To Be Published.
Page generated: Fri Jul 26 21:30:40 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy