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Chlorine in PDB 5ytb: RANY197A in Complex with RANBP1-CRM1

Protein crystallography data

The structure of RANY197A in Complex with RANBP1-CRM1, PDB code: 5ytb was solved by Q.Sun, Y.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 105.285, 105.285, 305.726, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 22.9

Other elements in 5ytb:

The structure of RANY197A in Complex with RANBP1-CRM1 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the RANY197A in Complex with RANBP1-CRM1 (pdb code 5ytb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the RANY197A in Complex with RANBP1-CRM1, PDB code: 5ytb:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 5ytb

Go back to Chlorine Binding Sites List in 5ytb
Chlorine binding site 1 out of 7 in the RANY197A in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of RANY197A in Complex with RANBP1-CRM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:73.5
occ:1.00
 O A:HOH449 3.1 55.9 1.0
CD C:ARG898 3.3 76.7 1.0
N A:ARG95 3.4 45.9 1.0
CG A:ARG95 3.6 62.9 1.0
O A:THR93 3.7 43.5 1.0
NH1 C:ARG898 3.7 76.5 1.0
CA A:SER94 3.9 44.1 1.0
CG A:LYS130 3.9 53.4 1.0
CB A:LYS130 4.1 50.9 1.0
CB A:ARG95 4.2 54.8 1.0
C A:SER94 4.2 45.6 1.0
NE C:ARG898 4.3 78.1 1.0
CG C:ARG898 4.4 75.6 1.0
CA A:ARG95 4.4 49.7 1.0
CZ C:ARG898 4.4 77.4 1.0
C A:THR93 4.4 45.5 1.0
NZ A:LYS130 4.5 62.1 1.0
N A:SER94 4.5 43.7 1.0
CD A:ARG95 4.6 68.9 1.0
CD A:LYS130 4.6 55.7 1.0
OG A:SER94 4.9 49.2 1.0
CB A:SER94 4.9 45.1 1.0

Chlorine binding site 2 out of 7 in 5ytb

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Chlorine binding site 2 out of 7 in the RANY197A in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of RANY197A in Complex with RANBP1-CRM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:86.7
occ:1.00
 O A:VAL124 3.5 50.7 1.0
O A:ASP125 4.0 54.2 1.0
O C:LYS457 4.2 64.1 1.0
CB C:LYS457 4.3 65.4 1.0
C A:ASP125 4.4 51.6 1.0
CA A:ASP125 4.4 50.5 1.0
O C:HOH1351 4.4 48.6 1.0
O A:HOH453 4.4 55.8 1.0
O A:HOH443 4.5 56.6 1.0
C A:VAL124 4.6 48.0 1.0
O A:HOH452 4.8 64.4 1.0
O A:HOH413 4.8 49.0 1.0
N A:ASP125 4.9 49.3 1.0
C C:LYS457 5.0 61.0 1.0

Chlorine binding site 3 out of 7 in 5ytb

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Chlorine binding site 3 out of 7 in the RANY197A in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of RANY197A in Complex with RANBP1-CRM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1102

b:83.3
occ:1.00
 O C:HOH1346 3.1 51.3 1.0
N C:GLU1009 3.4 56.6 1.0
CB C:GLU1009 3.5 64.7 1.0
CB C:THR1007 3.8 54.4 1.0
N C:SER1008 3.8 55.4 1.0
CB C:SER1008 4.0 56.5 1.0
CA C:GLU1009 4.1 60.3 1.0
OG1 C:THR1007 4.1 50.4 1.0
OG C:SER1008 4.2 56.4 1.0
CA C:SER1008 4.2 57.6 1.0
C C:SER1008 4.3 55.9 1.0
C C:THR1007 4.4 56.2 1.0
CA C:THR1007 4.5 54.7 1.0
O C:HOH1304 4.7 56.7 1.0
CG2 C:THR1007 4.7 53.8 1.0
CG C:GLU1009 4.8 69.5 1.0

Chlorine binding site 4 out of 7 in 5ytb

Go back to Chlorine Binding Sites List in 5ytb
Chlorine binding site 4 out of 7 in the RANY197A in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of RANY197A in Complex with RANBP1-CRM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1103

b:92.3
occ:1.00
 O C:LYS605 3.0 71.0 1.0
N C:TYR608 3.2 84.6 1.0
CB C:TYR608 3.4 87.7 1.0
N C:LYS607 3.5 75.2 1.0
C C:CYS606 3.5 76.2 1.0
CA C:CYS606 3.6 75.5 1.0
C C:LYS605 3.7 70.7 1.0
CG C:LYS607 3.8 79.9 1.0
CA C:TYR608 3.9 86.3 1.0
N C:CYS606 4.0 71.8 1.0
O C:CYS606 4.0 73.8 1.0
C C:LYS607 4.2 84.8 1.0
CA C:LYS607 4.2 80.7 1.0
CB C:LYS607 4.6 80.9 1.0
CD2 C:HIS609 4.6 89.0 1.0
CG C:TYR608 4.6 93.3 1.0
CE C:LYS607 4.7 81.7 1.0
CE C:LYS567 4.8 85.6 1.0
NZ C:LYS567 4.9 85.8 1.0
CD C:LYS607 4.9 81.2 1.0
N C:HIS609 4.9 87.0 1.0
CA C:LYS605 4.9 72.8 1.0
C C:TYR608 5.0 84.7 1.0

Chlorine binding site 5 out of 7 in 5ytb

Go back to Chlorine Binding Sites List in 5ytb
Chlorine binding site 5 out of 7 in the RANY197A in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of RANY197A in Complex with RANBP1-CRM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1104

b:94.2
occ:1.00
 NE2 C:GLN62 3.1 59.4 1.0
O C:HOH1333 3.2 55.2 1.0
CB C:ASN113 3.7 62.8 1.0
O C:PRO61 3.8 57.2 1.0
C C:PRO61 3.9 57.5 1.0
CB C:PRO61 3.9 62.2 1.0
N C:GLN62 4.1 55.1 1.0
N C:LEU114 4.2 59.9 1.0
CD C:GLN62 4.2 63.0 1.0
CG2 A:ILE81 4.2 59.8 1.0
CD2 C:PHE65 4.3 53.8 1.0
CA C:GLN62 4.3 55.3 1.0
CG C:GLN62 4.3 58.7 1.0
CB C:PHE65 4.4 55.0 1.0
ND2 C:ASN113 4.4 67.1 1.0
CA C:PRO61 4.5 62.0 1.0
C C:ASN113 4.6 59.6 1.0
CB C:LEU114 4.6 60.0 1.0
CG C:ASN113 4.6 64.4 1.0
CD1 A:ILE81 4.6 60.9 1.0
CA C:LEU114 4.6 59.9 1.0
CG C:PHE65 4.7 54.0 1.0
CG1 A:ILE81 4.7 58.4 1.0
CA C:ASN113 4.7 62.7 1.0
CB C:GLN62 4.9 56.7 1.0

Chlorine binding site 6 out of 7 in 5ytb

Go back to Chlorine Binding Sites List in 5ytb
Chlorine binding site 6 out of 7 in the RANY197A in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of RANY197A in Complex with RANBP1-CRM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1105

b:97.1
occ:1.00
 NH1 C:ARG227 3.3 83.9 1.0
OE1 C:GLU191 4.0 0.1 1.0
O C:ARG227 4.3 63.4 1.0
CE1 C:TYR228 4.3 65.2 1.0
CD1 C:TYR228 4.3 64.6 1.0
CG C:ARG227 4.3 75.9 1.0
CZ C:ARG227 4.5 83.6 1.0
C C:ARG227 4.6 63.1 1.0
CB C:ARG227 4.8 70.5 1.0
CD C:ARG227 4.8 79.0 1.0
N C:TYR228 4.8 62.6 1.0
CA C:TYR228 4.9 64.0 1.0
CZ C:TYR228 4.9 66.8 1.0
CG C:TYR228 4.9 63.5 1.0
OE1 C:GLU231 4.9 76.5 1.0
CG2 C:THR232 4.9 69.5 1.0
CD C:GLU191 5.0 99.2 1.0

Chlorine binding site 7 out of 7 in 5ytb

Go back to Chlorine Binding Sites List in 5ytb
Chlorine binding site 7 out of 7 in the RANY197A in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of RANY197A in Complex with RANBP1-CRM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1106

b:92.4
occ:1.00
 NH1 C:ARG77 3.2 89.7 1.0
O C:ILE1039 4.0 50.5 1.0
CE1 C:HIS1005 4.0 54.3 1.0
NE2 C:HIS1005 4.0 53.5 1.0
O C:LYS1040 4.1 51.3 1.0
C C:LYS1040 4.1 53.1 1.0
CZ C:ARG77 4.1 87.8 1.0
ND1 C:HIS1005 4.2 53.3 1.0
CD2 C:HIS1005 4.3 52.3 1.0
N C:GLU1041 4.4 52.1 1.0
CG C:HIS1005 4.4 52.0 1.0
O C:GLU1041 4.5 51.3 1.0
CA C:LYS1040 4.6 54.9 1.0
C C:GLU1041 4.6 49.9 1.0
CA C:GLU1041 4.6 51.4 1.0
NE C:ARG77 4.7 86.7 1.0
O C:ARG77 4.8 58.2 1.0
NH2 C:ARG77 4.9 87.0 1.0
CG2 C:VAL1042 4.9 51.5 1.0
C C:ILE1039 4.9 50.2 1.0

Reference:

Q.Sun, Y.Zhang. RANY197A in Complex with RANBP1-CRM1 To Be Published.
Page generated: Sat Jul 12 11:03:01 2025

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