Chlorine in PDB 5zu4: Crystal Structure of Lamprey Immune Protein

The structure of Crystal Structure of Lamprey Immune Protein, PDB code: 5zu4 was solved by Q.W.Li, Y.Pang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	89.08 / 2.39
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	105.049, 105.049, 168.080, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 24.8

The binding sites of Chlorine atom in the Crystal Structure of Lamprey Immune Protein (pdb code 5zu4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Lamprey Immune Protein, PDB code: 5zu4:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Crystal Structure of Lamprey Immune Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Lamprey Immune Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl407 b:85.6 occ:1.00 O A:GLN13 2.6 45.7 1.0 O A:GLY15 2.9 48.1 1.0 C A:GLY14 3.4 49.3 1.0 N A:GLY15 3.6 44.4 1.0 CA A:GLY14 3.6 48.5 1.0 O A:GLY14 3.7 49.9 1.0 NE A:ARG129 3.7 59.7 1.0 C A:GLN13 3.7 49.4 1.0 CD A:ARG129 3.8 50.6 1.0 C A:GLY15 4.0 44.3 1.0 N A:GLY14 4.1 48.4 1.0 CA A:GLY15 4.3 43.9 1.0 CZ A:ARG129 4.5 74.6 1.0 O A:HOH572 4.7 45.3 1.0 CG A:ARG129 4.9 49.2 1.0 NH1 A:ARG129 5.0 85.9 1.0 O A:HOH505 5.0 46.4 1.0

Chlorine binding site 2 out of 4 in the Crystal Structure of Lamprey Immune Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Lamprey Immune Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl405 b:71.6 occ:1.00 OE1 B:GLU244 2.7 62.9 1.0 O A:HOH582 2.9 58.3 1.0 NZ B:LYS192 2.9 46.6 1.0 O A:GLU206 3.2 39.6 1.0 CD B:GLU244 3.3 57.1 1.0 OE2 B:GLU244 3.4 59.8 1.0 CD1 B:ILE194 3.7 47.4 1.0 CE B:LYS192 3.8 40.7 1.0 O B:HOH518 3.9 38.3 1.0 C A:GLU206 4.3 42.1 1.0 CA A:SER207 4.5 39.7 1.0 CG B:GLU244 4.7 50.7 1.0 CG1 B:ILE194 4.8 43.9 1.0 N A:SER207 4.9 40.7 1.0

Chlorine binding site 3 out of 4 in the Crystal Structure of Lamprey Immune Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Lamprey Immune Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl406 b:70.7 occ:1.00 O B:THR186 2.7 33.9 1.0 OH B:TYR175 2.7 39.5 1.0 O A:HOH536 2.7 48.5 1.0 O B:HOH543 3.2 35.8 1.0 CE2 B:TYR175 3.3 38.4 1.0 CZ B:TYR175 3.4 38.7 1.0 C B:THR186 3.6 36.1 1.0 CA B:PHE187 3.9 33.0 1.0 OD2 A:ASP117 4.0 46.7 1.0 N B:PHE187 4.0 33.8 1.0 O A:HOH539 4.1 39.3 1.0 O B:HOH537 4.4 41.0 1.0 CG A:ASP117 4.5 39.0 1.0 CB B:TYR185 4.5 42.1 1.0 CD2 B:TYR175 4.6 37.9 1.0 N B:THR186 4.6 39.2 1.0 CG B:MET173 4.6 45.2 1.0 CE1 B:TYR175 4.7 37.0 1.0 CA B:THR186 4.7 39.1 1.0 CB B:PHE187 4.8 31.6 1.0 C B:PHE187 4.9 34.9 1.0 OD1 A:ASP117 4.9 36.2 1.0 N B:GLU188 4.9 32.8 1.0 CD1 B:PHE187 5.0 37.8 1.0

Chlorine binding site 4 out of 4 in the Crystal Structure of Lamprey Immune Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Lamprey Immune Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl407 b:80.8 occ:1.00 O B:PHE139 2.6 52.0 1.0 O B:HOH532 2.8 47.4 1.0 O B:HOH533 2.8 49.4 1.0 N B:HIS8 3.0 62.2 1.0 CA B:LEU7 3.5 56.2 1.0 CG2 B:ILE116 3.5 52.5 1.0 O B:THR6 3.6 51.6 1.0 C B:PHE139 3.7 47.0 1.0 C B:LEU7 3.7 58.6 1.0 CD2 B:PHE141 3.9 45.5 1.0 N B:PHE139 4.0 51.5 1.0 CA B:HIS8 4.0 62.6 1.0 CB B:HIS8 4.0 69.0 1.0 N B:LEU7 4.1 54.5 1.0 O B:HIS8 4.1 54.7 1.0 C B:THR6 4.1 49.8 1.0 CE2 B:PHE141 4.2 45.4 1.0 CA B:PHE139 4.3 49.4 1.0 C B:HIS8 4.4 60.7 1.0 CD1 B:LEU7 4.5 48.9 1.0 CB B:PHE139 4.6 48.6 1.0 CB B:LEU7 4.7 53.1 1.0 N B:ILE140 4.8 46.2 1.0 O B:ASP117 4.8 46.7 1.0 O B:LEU7 4.9 59.1 1.0 CB B:ILE116 4.9 53.7 1.0 C B:GLY138 5.0 54.0 1.0

Q.W.Li, Y.Pang. Structure of A Pore-Forming Protein To Be Published.