Chlorine in PDB 6ab9: The Crystal Structure of the Relaxed State of Nonlabens Marinus Rhodopsin 3

The structure of The Crystal Structure of the Relaxed State of Nonlabens Marinus Rhodopsin 3, PDB code: 6ab9 was solved by J.-H.Yun, M.Ohki, J.-H.Park, Z.Jin, W.Lee, H.Liu, J.R.H.Tame, N.Shibayama, S.-Y.Park, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.64 / 1.75
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.634, 49.220, 69.327, 90.00, 110.02, 90.00
R / Rfree (%)	17.5 / 20.4

The binding sites of Chlorine atom in the The Crystal Structure of the Relaxed State of Nonlabens Marinus Rhodopsin 3 (pdb code 6ab9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Crystal Structure of the Relaxed State of Nonlabens Marinus Rhodopsin 3, PDB code: 6ab9:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the The Crystal Structure of the Relaxed State of Nonlabens Marinus Rhodopsin 3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of the Relaxed State of Nonlabens Marinus Rhodopsin 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:31.9 occ:1.00 ND2 A:ASN98 3.1 29.6 1.0 OG1 A:THR102 3.3 29.7 1.0 CE A:LYS235 3.3 34.3 1.0 CG2 A:THR102 3.5 24.3 1.0 NZ A:LYS235 3.5 29.9 1.0 O A:HOH443 3.6 26.0 1.0 CD1 A:TRP99 3.6 18.8 1.0 CB A:THR102 3.8 21.1 1.0 NE1 A:TRP99 4.0 17.5 1.0 CB A:ALA61 4.1 20.7 1.0 CG A:ASN98 4.1 36.9 1.0 CA A:ALA61 4.2 22.1 1.0 CB A:ASN98 4.3 19.3 1.0 C15 A:RET303 4.3 28.9 1.0 C14 A:RET303 4.5 21.7 1.0 CD A:LYS235 4.6 25.8 1.0 C A:ASN98 4.7 21.8 1.0 N A:ALA61 4.7 17.9 1.0 N A:TRP99 4.8 17.7 1.0 O A:ASN98 4.8 21.1 1.0 CG A:TRP99 4.9 20.2 1.0 CA A:TRP99 5.0 19.1 1.0

Chlorine binding site 2 out of 2 in the The Crystal Structure of the Relaxed State of Nonlabens Marinus Rhodopsin 3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of the Relaxed State of Nonlabens Marinus Rhodopsin 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:42.1 occ:1.00 N A:LYS46 3.2 21.1 1.0 CD A:PRO45 3.4 22.5 1.0 N A:PRO45 3.6 23.7 1.0 CB A:LYS46 3.6 28.2 1.0 CG A:LYS46 3.8 36.6 1.0 CB A:ALA44 3.8 19.3 1.0 CB A:PRO45 3.8 27.3 1.0 CG A:PRO45 4.0 30.4 1.0 CA A:LYS46 4.0 23.6 1.0 C A:PRO45 4.0 17.9 1.0 CA A:PRO45 4.0 21.9 1.0 CD A:LYS46 4.1 50.7 1.0 C A:ALA44 4.1 26.7 1.0 CA A:ALA44 4.5 21.6 1.0 O A:ALA44 4.9 22.1 1.0

J.-H.Yun, M.Ohki, J.-H.Park, Z.Jin, W.Lee, H.Liu, J.R.H.Tame, N.Shibayama, S.-Y.Park. The Pumping Mechanism of Nm-R3, A Light-Driven Cyanobacterial Chloride Importer in the Rhodopsin Family To Be Published.