Chlorine in PDB 6abq: Crystal Structure of Transcription Factor From Listeria Monocytogenes

The structure of Crystal Structure of Transcription Factor From Listeria Monocytogenes, PDB code: 6abq was solved by C.Lee, M.Hong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.30
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	73.955, 73.955, 66.313, 90.00, 90.00, 120.00
R / Rfree (%)	20.5 / 25.3

The binding sites of Chlorine atom in the Crystal Structure of Transcription Factor From Listeria Monocytogenes (pdb code 6abq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Transcription Factor From Listeria Monocytogenes, PDB code: 6abq:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Transcription Factor From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Transcription Factor From Listeria Monocytogenes within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:14.7 occ:1.00 N B:LYS74 3.3 21.8 1.0 O B:HOH305 3.3 12.0 1.0 O B:HOH301 3.3 2.1 1.0 CA B:ARG73 3.8 25.5 1.0 CG B:ARG73 3.8 30.1 1.0 CB B:ARG73 3.9 26.3 1.0 CB B:LYS74 4.0 20.4 1.0 OH B:TYR48 4.0 37.3 0.5 OH B:TYR48 4.1 42.6 0.5 C B:ARG73 4.1 22.5 1.0 CA B:LYS74 4.2 19.5 1.0 O B:LYS74 4.3 18.7 1.0 O B:HOH353 4.6 28.3 1.0 C B:LYS74 4.7 18.1 1.0 CE2 B:TYR48 4.8 35.2 0.5 CB B:TYR26 4.8 24.7 1.0 CZ B:TYR48 4.9 34.9 0.5 CE1 B:TYR48 5.0 36.1 0.5 CZ B:TYR48 5.0 38.5 0.5

Chlorine binding site 2 out of 2 in the Crystal Structure of Transcription Factor From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Transcription Factor From Listeria Monocytogenes within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:12.2 occ:1.00 O A:HOH306 3.1 4.1 1.0 O A:HOH338 3.1 5.1 1.0 N A:LYS74 3.3 14.5 1.0 CA A:ARG73 3.7 15.8 1.0 CD A:ARG73 3.8 15.4 1.0 C A:ARG73 4.0 15.5 1.0 CB A:ARG73 4.0 15.2 1.0 CB A:LYS74 4.2 13.9 1.0 OH A:TYR48 4.2 14.5 1.0 CD A:LYS74 4.2 15.6 1.0 CA A:LYS74 4.3 14.2 1.0 NH1 A:ARG73 4.4 15.7 1.0 CG A:ARG73 4.5 15.7 1.0 CE1 A:TYR48 4.5 13.6 1.0 CB A:TYR26 4.5 14.0 1.0 O A:LYS74 4.5 12.8 1.0 O A:HOH309 4.6 10.7 1.0 O A:PRO72 4.7 18.0 1.0 CG A:LYS74 4.8 15.2 1.0 CZ A:TYR48 4.8 14.4 1.0 C A:LYS74 4.9 13.5 1.0 NE A:ARG73 4.9 16.1 1.0 N A:ARG73 5.0 17.3 1.0

C.Lee, M.I.Kim, J.Park, M.Hong. Structure-Based Molecular Characterization and Regulatory Mechanism of the Lftr Transcription Factor From Listeria Monocytogenes: Conformational Flexibilities and A Ligand-Induced Regulatory Mechanism. Plos One V. 14 15017 2019.
ISSN: ESSN 1932-6203
PubMed: 30970033
DOI: 10.1371/JOURNAL.PONE.0215017