Chlorine in PDB 6axs: Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein

The structure of Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein, PDB code: 6axs was solved by A.T.Gres, K.A.Kirby, S.G.Sarafianos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.08 / 2.40
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	92.475, 92.475, 57.675, 90.00, 90.00, 120.00
R / Rfree (%)	22.8 / 26.6

The structure of Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein also contains other interesting chemical elements:

Iodine

(I)

10 atoms

The binding sites of Chlorine atom in the Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein (pdb code 6axs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein, PDB code: 6axs:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in the Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl311 b:45.8 occ:1.00 O A:GLY60 2.5 63.0 1.0 CD2 A:HIS62 3.4 54.4 1.0 NE2 A:HIS62 3.7 55.4 1.0 C A:GLY60 3.7 50.7 1.0 CG A:GLU28 3.8 90.8 1.0 CG1 A:VAL27 4.0 48.9 1.0 CG1 A:VAL59 4.1 32.6 1.0 CA A:GLU28 4.3 81.7 1.0 N A:GLY60 4.3 44.5 1.0 N A:GLU28 4.4 69.3 1.0 CA A:GLY60 4.6 37.4 1.0 C A:VAL27 4.6 60.0 1.0 CB A:GLU28 4.6 84.9 1.0 CG A:HIS62 4.7 57.2 1.0 N A:GLY61 4.7 52.2 1.0 CA A:GLY61 4.7 56.1 1.0 O A:VAL27 4.7 57.7 1.0 CB A:VAL27 4.8 50.0 1.0 C A:GLY61 4.8 44.9 1.0 CD A:GLU28 4.9 97.1 1.0 O A:GLY61 5.0 43.8 1.0 CE1 A:HIS62 5.0 59.0 1.0

Chlorine binding site 2 out of 6 in the Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl312 b:68.3 occ:1.00 CD A:ARG18 3.1 0.5 1.0 NE A:ARG18 4.0 0.8 1.0 CG A:ARG18 4.1 0.6 1.0 NH1 A:ARG18 4.4 0.1 1.0 CZ A:ARG18 4.6 0.1 1.0

Chlorine binding site 3 out of 6 in the Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl313 b:80.8 occ:1.00 O A:HOH426 3.1 44.9 1.0 CD2 A:TYR145 3.4 76.7 1.0 O A:HOH411 3.8 64.4 1.0 CE2 A:TYR145 3.8 71.4 1.0 CB A:ALA31 3.8 80.8 1.0 CG A:TYR145 4.4 77.8 1.0 CD2 A:PHE32 4.5 54.7 1.0 CE1 A:HIS62 4.7 59.0 1.0 CB A:TYR145 4.7 71.8 1.0 N A:PHE32 4.8 68.4 1.0 ND1 A:HIS62 4.8 54.9 1.0 CA A:ALA31 5.0 78.2 1.0

Chlorine binding site 4 out of 6 in the Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl314 b:73.0 occ:0.98 O A:HOH455 3.3 62.4 1.0 I A:IOD308 3.7 0.0 0.6 CD1 A:ILE129 4.1 42.0 1.0 CZ3 A:TRP80 4.1 55.1 1.0 CG1 A:ILE129 4.4 53.7 1.0 CH2 A:TRP80 4.6 44.4 1.0

Chlorine binding site 5 out of 6 in the Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl315 b:65.3 occ:1.00 O A:HOH428 2.8 29.0 1.0 N A:ARG162 3.5 53.3 1.0 N A:PHE161 3.7 46.9 1.0 CB A:ARG162 3.8 54.9 1.0 CB A:PRO160 3.9 48.0 1.0 O A:GLN219 4.2 76.2 1.0 CA A:GLN219 4.3 78.4 1.0 CA A:ARG162 4.3 52.0 1.0 C A:PRO160 4.3 50.0 1.0 CA A:PHE161 4.4 50.9 1.0 CB A:PHE161 4.4 43.2 1.0 CA A:PRO160 4.4 46.8 1.0 C A:PHE161 4.4 51.0 1.0 O A:CYS218 4.5 57.5 1.0 CG A:GLN219 4.7 89.0 1.0 C A:GLN219 4.7 85.8 1.0 NE A:ARG162 4.8 75.3 1.0

Chlorine binding site 6 out of 6 in the Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of the V11I/T58A/P122A Mutant of the Hiv-1 Capsid Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl316 b:60.9 occ:1.00 O A:HOH422 3.0 43.9 1.0 CG A:PRO38 3.4 60.4 1.0 NH2 A:ARG173 3.4 36.9 1.0 CD A:PRO38 4.2 60.0 1.0 NE A:ARG173 4.2 46.6 1.0 CZ A:ARG173 4.3 45.0 1.0 CB A:PRO38 4.6 59.1 1.0

M.Novikova, A.T.Gres, K.A.Kirby, S.G.Sarafianos, E.O.Freed. Identification of A Novel Element in Hiv-1 Capsid Critical For Assembly and Maturation To Be Published.