Chlorine in PDB 6aya: Structure of the Native Full-Length Hiv-1 Capsid Protein in Complex with NUP153 Peptide

The structure of Structure of the Native Full-Length Hiv-1 Capsid Protein in Complex with NUP153 Peptide, PDB code: 6aya was solved by A.T.Gres, K.A.Kirby, S.G.Sarafianos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.24 / 2.40
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	92.544, 92.544, 58.288, 90.00, 90.00, 120.00
R / Rfree (%)	23.4 / 27.4

The structure of Structure of the Native Full-Length Hiv-1 Capsid Protein in Complex with NUP153 Peptide also contains other interesting chemical elements:

Iodine

(I)

7 atoms

The binding sites of Chlorine atom in the Structure of the Native Full-Length Hiv-1 Capsid Protein in Complex with NUP153 Peptide (pdb code 6aya). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of the Native Full-Length Hiv-1 Capsid Protein in Complex with NUP153 Peptide, PDB code: 6aya:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of the Native Full-Length Hiv-1 Capsid Protein in Complex with NUP153 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Native Full-Length Hiv-1 Capsid Protein in Complex with NUP153 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl308 b:70.0 occ:1.00 N A:ARG162 3.2 61.5 1.0 CB A:ARG162 3.5 76.1 1.0 N A:PHE161 3.6 73.2 1.0 CB A:PHE161 3.8 57.5 1.0 CA A:ARG162 3.9 59.3 1.0 C A:PHE161 4.0 56.8 1.0 CA A:PHE161 4.0 58.4 1.0 CA A:GLN219 4.3 98.3 1.0 O A:CYS218 4.4 83.6 1.0 CB A:PRO160 4.4 70.8 1.0 C A:PRO160 4.5 72.3 1.0 O A:MET215 4.6 75.7 1.0 CG A:ARG162 4.7 79.4 1.0 O A:GLN219 4.8 92.9 1.0 CD A:ARG162 4.8 74.8 1.0 C A:CYS218 4.9 75.1 1.0 CA A:PRO160 4.9 72.9 1.0 N A:GLN219 4.9 80.4 1.0 CG A:PHE161 4.9 56.9 1.0 CB A:GLN219 5.0 0.3 1.0

Chlorine binding site 2 out of 2 in the Structure of the Native Full-Length Hiv-1 Capsid Protein in Complex with NUP153 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Native Full-Length Hiv-1 Capsid Protein in Complex with NUP153 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl309 b:87.4 occ:1.00 O A:HOH449 3.1 66.8 1.0 NE A:ARG167 3.3 70.4 1.0 CD1 A:ILE153 3.6 49.9 1.0 CB A:ARG167 3.8 52.9 1.0 CG A:ARG167 4.0 44.9 1.0 NH2 A:ARG167 4.0 82.0 1.0 CZ A:ARG167 4.1 79.3 1.0 CD A:ARG167 4.2 55.2 1.0 CA A:ARG167 4.8 45.0 1.0 OG1 A:THR171 4.9 54.4 1.0 CG2 A:THR148 4.9 66.3 1.0 CG1 A:ILE153 5.0 45.7 1.0

A.T.Gres, K.A.Kirby, S.G.Sarafianos. Characterization of Hiv-1 Capsid Interactions with Host Cell Factors To Be Published.