Atomistry » Chlorine » PDB 6b4n-6bb2 » 6b5q
Atomistry »
  Chlorine »
    PDB 6b4n-6bb2 »
      6b5q »

Chlorine in PDB 6b5q: DCN1 Bound to 38

Protein crystallography data

The structure of DCN1 Bound to 38, PDB code: 6b5q was solved by J.Stuckey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.44 / 2.16
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 88.087, 90.841, 105.010, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 24.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the DCN1 Bound to 38 (pdb code 6b5q). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the DCN1 Bound to 38, PDB code: 6b5q:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6b5q

Go back to Chlorine Binding Sites List in 6b5q
Chlorine binding site 1 out of 2 in the DCN1 Bound to 38


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of DCN1 Bound to 38 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl2

b:42.8
occ:1.00
CL D:CZS2 0.0 42.8 1.0
C34 D:CZS2 1.7 44.0 1.0
C35 D:CZS2 2.7 44.3 1.0
C33 D:CZS2 2.7 40.8 1.0
H47 D:CZS2 2.8 40.7 1.0
H48 D:CZS2 2.8 45.0 1.0
CZ A:PHE117 3.6 44.6 1.0
CE1 A:PHE117 3.7 43.0 1.0
CA A:ALA106 3.8 35.9 1.0
CE2 A:PHE117 3.8 47.3 1.0
CD1 A:PHE117 4.0 41.2 1.0
C36 D:CZS2 4.0 45.2 1.0
C32 D:CZS2 4.0 40.9 1.0
CD2 A:PHE117 4.1 43.3 1.0
CB A:ALA106 4.1 34.6 1.0
CG A:PHE117 4.2 39.6 1.0
N A:ALA106 4.2 39.7 1.0
CB A:PHE109 4.2 41.0 1.0
CE2 A:PHE89 4.3 56.1 1.0
CG A:PHE109 4.4 44.0 1.0
CG2 A:ILE105 4.4 51.4 1.0
CB A:ALA111 4.5 34.9 1.0
C31 D:CZS2 4.5 42.1 1.0
CD1 A:PHE109 4.5 46.5 1.0
C A:ILE105 4.6 44.8 1.0
O A:ILE105 4.7 44.2 1.0
H46 D:CZS2 4.9 40.9 1.0
CD2 A:PHE109 4.9 44.9 1.0
C A:ALA106 5.0 39.8 1.0

Chlorine binding site 2 out of 2 in 6b5q

Go back to Chlorine Binding Sites List in 6b5q
Chlorine binding site 2 out of 2 in the DCN1 Bound to 38


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of DCN1 Bound to 38 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl2

b:48.4
occ:1.00
CL E:CZS2 0.0 48.4 1.0
C34 E:CZS2 1.7 49.1 1.0
C35 E:CZS2 2.7 46.7 1.0
C33 E:CZS2 2.7 47.4 1.0
H47 E:CZS2 2.8 47.6 1.0
H48 E:CZS2 2.9 46.2 1.0
CA B:ALA106 3.7 43.2 1.0
CZ B:PHE117 3.7 48.3 1.0
CE1 B:PHE117 3.8 48.3 1.0
CE2 B:PHE117 3.8 49.8 1.0
CB B:ALA106 4.0 40.9 1.0
C36 E:CZS2 4.0 48.2 1.0
C32 E:CZS2 4.0 46.0 1.0
N B:ALA106 4.0 46.6 1.0
CD1 B:PHE117 4.1 46.0 1.0
CD2 B:PHE117 4.1 46.0 1.0
CG2 B:ILE105 4.2 56.8 1.0
CG B:PHE117 4.3 43.0 1.0
CE2 B:PHE89 4.3 60.4 1.0
CB B:PHE109 4.4 54.7 1.0
CB B:ALA111 4.4 42.6 1.0
C B:ILE105 4.5 53.8 1.0
C31 E:CZS2 4.5 46.1 1.0
CG B:PHE109 4.5 58.6 1.0
O B:ILE105 4.6 55.9 1.0
H46 E:CZS2 4.8 46.4 1.0
CD2 B:PHE109 4.9 61.8 1.0
CD1 B:PHE109 4.9 63.8 1.0
CZ B:PHE89 5.0 61.1 1.0
C B:ALA106 5.0 46.8 1.0

Reference:

H.Zhou, W.Zhou, B.Zhou, L.Liu, T.R.Chern, K.Chinnaswamy, J.Lu, D.Bernard, C.Y.Yang, S.Li, M.Wang, J.Stuckey, Y.Sun, S.Wang. High-Affinity Peptidomimetic Inhibitors of the DCN1-UBC12 Protein-Protein Interaction. J. Med. Chem. V. 61 1934 2018.
ISSN: ISSN 1520-4804
PubMed: 29438612
DOI: 10.1021/ACS.JMEDCHEM.7B01455
Page generated: Sat Jul 12 11:43:13 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy